CV712545

Overview
NameCV712545
Unique NameCV712545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 204
            ++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   80 YKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 249
            RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:   79 RYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 267
            + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 249
            RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   79 RYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CV712545 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 249
            ++ G L      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:   78 YKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
The following BLAST results are available for this feature:
BLAST of CV712545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_PYRAE1.383e-1148.5330S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_METMP2.359e-1142.6830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_SULIY3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA3.081e-1138.6430S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METM63.081e-1142.6830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_THEPD4.024e-1142.1730S ribosomal protein S4P OS=Thermofilum pendens (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I17_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712545 ID=CV712545; Name=CV712545; organism=Citrus sinensis; type=EST; length=494bp
CACAGGTATGGCTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTT
GGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGT
TCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGG
CAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGT
AGTGAGGGTTGATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCAT
TTGGAGGCGGGCGCCCCGGAAGAGTGAAGAGAAGGAACATTAAGGCTGCT
GCCAAGAAGGCCGCAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAAT
TACCTTGTGTGAGCAGATAGTTTTTTTATGGTTACAGTAGGAACTCTGGC
TGAACTTTGCAAATCGACTTATCTTCTCTTAAGTTTTATGTTTTTGCTAA
TTTTCTTCCTATAATAGGAGGTTTTGCTTGCTTTGTGCTTTACA
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