CV712544

Overview
NameCV712544
Unique NameCV712544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 5.945e-36
Identity = 70/96 (72.92%), Postives = 87/96 (90.62%), Query Frame = -1
Query:  194 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 481
            R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   82 RLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.033e-35
Identity = 69/96 (71.88%), Postives = 85/96 (88.54%), Query Frame = -1
Query:  194 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 481
            + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   82 KIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = -1
Query:  197 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 481
            R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   82 RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = -1
Query:  197 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 481
            R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   82 RVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.240e-33
Identity = 66/95 (69.47%), Postives = 83/95 (87.37%), Query Frame = -1
Query:  200 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 484
            H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:   78 HKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = -1
Query:  203 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 484
            H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:   80 HGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.468e-26
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = -1
Query:  194 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 481
            R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:   84 RLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = -1
Query:  197 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 370
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = -1
Query:  197 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 484
            H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:   81 HNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  212 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 484
            +R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:   78 YRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
The following BLAST results are available for this feature:
BLAST of CV712544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS9A_SCHPO5.945e-3672.9240S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_CAEEL5.033e-3571.8840S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9B_YEAST1.121e-3473.6840S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST1.121e-3473.6840S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_DICDI1.240e-3369.4740S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_TRYBB1.049e-3269.15Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO1.468e-2659.7940S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_TOBAC5.220e-2486.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS9_ENTHI2.193e-2255.6740S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS4_SULAC3.750e-1442.8630S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001I17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712544 ID=CV712544; Name=CV712544; organism=Citrus sinensis; type=EST; length=487bp
AAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACATAAA
ACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCTACTG
TAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCATCCT
CTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAATGTTC
CTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGAGTGA
GAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGT
TGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGA
GCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGAAG
ACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCT
TGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCCT
back to top