CV712544

Overview
NameCV712544
Unique NameCV712544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  206 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 481
            +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:   80 KYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  194 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 484
            +R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:   78 YRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = -1
Query:  230 EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 466
            +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:   92 QEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  233 GFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 475
            G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:   81 GLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  218 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 484
            ++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:   78 YKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  233 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 484
            +R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:   78 YRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = -1
Query:  221 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 481
            R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:   79 RLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481
            R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   79 RLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481
            R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   79 RLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481
            R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   79 RLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
The following BLAST results are available for this feature:
BLAST of CV712544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_METJA6.396e-1445.1630S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_SULTO8.354e-1440.2130S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS9_ENCCU1.091e-1348.1040S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_IGNH41.425e-1346.9130S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]
RS4_METS52.431e-1340.4530S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_STAMF5.415e-1342.8630S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_THESM9.236e-1344.8330S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_PYRHO9.236e-1346.9930S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_PYRFU1.575e-1245.7830S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB1.575e-1245.7830S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712544 ID=CV712544; Name=CV712544; organism=Citrus sinensis; type=EST; length=487bp
AAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACATAAA
ACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCTACTG
TAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCATCCT
CTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAATGTTC
CTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGAGTGA
GAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGT
TGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGA
GCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGAAG
ACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCT
TGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCCT
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