CV712544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14 Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = -1 Query: 206 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 481 +YG L+ LD VL+LTVE+ LERRLQTLVF+ G+A++ AR LI HI V ++V PS++V V+ + I ++ SPF P R K Sbjct: 80 KYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14 Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = -1 Query: 194 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 484 +R G +E+ LD +L L EN+LERRLQT+V+K G+A++I+ AR LI HI +G + V P ++V + I+F TSPF P + N+ Sbjct: 78 YRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13 Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = -1 Query: 230 EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 466 +E N L+ VL LT+ ++LERRLQ VF +G+AKS+HHAR+LI R I + Q+V++P F+VR D + IE++ S +G Sbjct: 92 QEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13 Identity = 38/81 (46.91%), Postives = 57/81 (70.37%), Query Frame = -1 Query: 233 GFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 475 G ++E+ LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+ HI + + V P ++VR D ++ I ++ TSP+ Sbjct: 81 GLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.431e-13 Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -1 Query: 218 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 484 ++ G L+ Q+ +D +L L E+ LERRLQT+V + G+A++I+ AR LI HI VG + + P ++V+ D + I+F TSPF P Sbjct: 78 YKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13 Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = -1 Query: 233 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 484 +R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI HI + + + P ++V + + ++++ TSPF Sbjct: 78 YRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13 Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = -1 Query: 221 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 481 R G L E + LD VL+LT+++ LERRLQTLVFK G+A++I AR LI HI V Q++ PS++V + + I + SPF + Sbjct: 79 RLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13 Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = -1 Query: 233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481 R G L E LD VL+LTVE+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 79 RLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12 Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = -1 Query: 233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481 R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 79 RLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12 Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = -1 Query: 233 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 481 R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 79 RLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160 The following BLAST results are available for this feature:
BLAST of CV712544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712544 ID=CV712544; Name=CV712544; organism=Citrus sinensis; type=EST; length=487bpback to top |