CV712544

Overview
NameCV712544
Unique NameCV712544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  233 LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 448
            LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:   89 LDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = -1
Query:  233 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 484
            HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:   78 HRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = -1
Query:  332 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 481
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:   81 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  236 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 481
            RY  L E +  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:   79 RYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  221 GFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 475
            G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:   81 GVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  218 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 481
            + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   79 KMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = -1
Query:  236 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 481
            RY  L ES+  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   79 RYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  236 LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 448
            LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:   92 LDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  281 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 484
            ++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   80 YKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  236 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 481
            RY  L E +  LD++L+L +E+ LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:   79 RYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
The following BLAST results are available for this feature:
BLAST of CV712544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_THEON2.058e-1250.0030S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_THEGJ2.058e-1246.4330S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS9_PIG4.584e-1268.0040S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS4_METM75.987e-1245.1230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_HYPBU5.987e-1242.3530S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_SULSO7.819e-1238.6430S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METM57.819e-1243.9030S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METKA7.819e-1245.0730S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_PYRCJ1.021e-1150.0030S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_METVS1.021e-1143.9030S ribosomal protein S4P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712544 ID=CV712544; Name=CV712544; organism=Citrus sinensis; type=EST; length=487bp
AAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACATAAA
ACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCTACTG
TAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCATCCT
CTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAATGTTC
CTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGAGTGA
GAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGT
TGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGA
GCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGAAG
ACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCT
TGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCCT
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