CV712544

Overview
NameCV712544
Unique NameCV712544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  233 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 484
            +R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   78 YRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = -1
Query:  281 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 484
            ++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   80 YKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  257 HRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 484
            ++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   80 YKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CV712544 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = -1
Query:  203 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 481
            RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:   84 RYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
The following BLAST results are available for this feature:
BLAST of CV712544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS4_AERPE3.880e-1138.1030S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_THENV5.068e-1150.0030S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_PYRIL5.068e-1143.4230S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_METLZ5.068e-1139.7830S ribosomal protein S4P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I17_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712544 ID=CV712544; Name=CV712544; organism=Citrus sinensis; type=EST; length=487bp
AAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACATAAA
ACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCTACTG
TAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCATCCT
CTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAATGTTC
CTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGAGTGA
GAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGAATGT
TGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCACTCGA
GCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCTGAAG
ACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCAAGCT
TGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCCT
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