CV712491

Overview
NameCV712491
Unique NameCV712491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_XENTR (Transmembrane protein 41B OS=Xenopus tropicalis GN=tmem41b PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.161e-23
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  220 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
            K+K+PR + D + L   L+ Y   + V  ++ Y +TYIF+QTF IPG+IF+S+L+G L+     L LV   +  GAS  + LS L+GRP+V  +  +K
Sbjct:   72 KIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFSYLLSYLVGRPVVYKYLSDK 169          

HSP 2 Score: 53.5286 bits (127), Expect = 1.161e-23
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 2
Query:  614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
            Q+ + R+ L+NY++FLRITP LPN FIN+ SP++++P
Sbjct:  176 QVERHRDHLINYIIFLRITPFLPNWFINITSPVINVP 212          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41_CAEEL (Transmembrane protein 41 homolog OS=Caenorhabditis elegans GN=tag-175 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.251e-21
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            LK PR + D + L   L+ Y ++     + G    Y+F+Q+F IPG+IF+++L+G LF     ++LV   +  GA+ C+ +SKL GR  V   +PE++  +Q ++
Sbjct:   43 LKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIVVYVFLQSFAIPGSIFLTILSGYLFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKFPERIAKWQDDL 147          

HSP 2 Score: 52.7582 bits (125), Expect = 2.251e-21
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 2
Query:  617 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
            ++K R+  LNYM+FLR+TP +PN  IN+ASP++D+P
Sbjct:  147 LSKHRDDFLNYMIFLRVTPIVPNWLINIASPVLDVP 182          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41A_MOUSE (Transmembrane protein 41A OS=Mus musculus GN=Tmem41a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.947e-21
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            L  P  +A+LR L + L  Y +++     + +CS Y++ Q F IPG+ F+++LAGALFG   GL+L     + GA+ C+ LS L G+ LV  ++P+K+   Q +V
Sbjct:   42 LWFPSDLAELRELSEVLREYRKEHQAYVFLLFCSAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLLSSLFGKQLVISYFPDKVALLQKKV 146          

HSP 2 Score: 40.817 bits (94), Expect = 4.947e-21
Identity = 16/37 (43.24%), Postives = 27/37 (72.97%), Query Frame = 2
Query:  614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
            ++ + R  L  ++LFLR+ P  PN F+NL++PI++IP
Sbjct:  145 KVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIP 181          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41A_HUMAN (Transmembrane protein 41A OS=Homo sapiens GN=TMEM41A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.118e-20
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            L  P  +A+LR L + L  Y +++     + +C  Y++ Q F IPG+ F+++LAGALFG   GL+L     + GA+ C+ LS + G+ LV  ++P+K+   Q +V
Sbjct:   42 LWFPSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKV 146          

HSP 2 Score: 40.817 bits (94), Expect = 3.118e-20
Identity = 16/37 (43.24%), Postives = 27/37 (72.97%), Query Frame = 2
Query:  614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
            ++ + R  L  ++LFLR+ P  PN F+NL++PI++IP
Sbjct:  145 KVEENRNSLFFFLLFLRLFPMTPNWFLNLSAPILNIP 181          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: T41AA_DANRE (Transmembrane protein 41A-A OS=Danio rerio GN=tmem41aa PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.549e-19
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  220 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            +LK P  + +L+ + + L  Y  ++    ++ +CS Y++ Q F IPG+ F+++LAGALFG   GL+L     T GA+ CF LS+  G+  +   +P+K+   Q +V
Sbjct:   58 RLKFPSDLDELKEMAELLQFYKTEHTGYVLLLFCSAYLYKQAFAIPGSSFLNILAGALFGTWFGLLLTCVLTTVGATLCFLLSQAFGKHHIVKLFPDKVAMLQKKV 163          

HSP 2 Score: 39.6614 bits (91), Expect = 2.549e-19
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 2
Query:  614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
            ++ + R  L  ++LFLR  P  PN F+N+ SPI++IP
Sbjct:  162 KVEENRSSLFFFLLFLRFFPMSPNWFLNMTSPILNIP 198          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41A_BOVIN (Transmembrane protein 41A OS=Bos taurus GN=TMEM41A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 40/105 (38.10%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            L  P  +A+LR L + L  Y +++ V   + +CS Y++ Q+F IPG+ F+++LAGALFG   GL+L     + GA+ C+ LS + G+ LV +++P+K+   Q +V
Sbjct:   42 LWFPSDLAELRELSEVLREYRKEHQVYVFLLFCSAYLYKQSFAIPGSSFLNVLAGALFGPWLGLLLCCVLTSVGATGCYLLSSVFGKQLVVFYFPDKVALLQKKV 146          
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: T41AB_DANRE (Transmembrane protein 41A-B OS=Danio rerio GN=tmem41ab PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  220 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
            +LK P  + +LR L + L  Y  ++     I +CS Y++ Q+F IPG+ F+++L+GALFG + GLI+     T G+++C+ LS+  G+  +   +PEK+   Q  V
Sbjct:   52 RLKFPSDLEELRELAELLKFYKTEHTGYVFILFCSAYLYKQSFAIPGSSFLNMLSGALFGPLHGLIIACTLTTVGSTNCYLLSRTFGKRHIVRLFPEKVAMLQRMV 157          
The following BLAST results are available for this feature:
BLAST of CV712491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TM41B_XENTR1.161e-2340.82Transmembrane protein 41B OS=Xenopus tropicalis GN... [more]
TM41_CAEEL2.251e-2134.29Transmembrane protein 41 homolog OS=Caenorhabditis... [more]
TM41A_MOUSE4.947e-2138.10Transmembrane protein 41A OS=Mus musculus GN=Tmem4... [more]
TM41A_HUMAN3.118e-2036.19Transmembrane protein 41A OS=Homo sapiens GN=TMEM4... [more]
T41AA_DANRE2.549e-1934.91Transmembrane protein 41A-A OS=Danio rerio GN=tmem... [more]
TM41A_BOVIN5.430e-1638.10Transmembrane protein 41A OS=Bos taurus GN=TMEM41A... [more]
T41AB_DANRE1.747e-1435.85Transmembrane protein 41A-B OS=Danio rerio GN=tmem... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712491 ID=CV712491; Name=CV712491; organism=Citrus sinensis; type=EST; length=728bp
AATGTGGCGGCTGGCGATGGATCGAGAGTGTTCAGAGACGAAGAAGAGAG
CGTAAACGGCAAAGTCAAAGAAGGCGATGAATCGCCGACGGCTAAGAGAT
TCAAATCGGAACGATTTCCGCTTACTCATTGGGAATTCGCCGCGTTTGTC
GGCGTATTCTTGCTGTTTGTTACCGGTCTCTTCTGTATTTACCTCACCAT
GCCCGCCGCTGACTACGGCAAGCTCAAGCTGCCCCGCACCATCGCCGATC
TCCGCCTGCTCAAAGATAATCTTGCAACGTATGCTCAGGATTACCCAGTG
CCATTCATTATTGGATACTGCTCAACATACATTTTCATGCAGACATTTAT
GATTCCAGGAACAATTTTCATGTCATTGCTAGCTGGAGCTCTTTTTGGAG
TTATTAGAGGCCTTATCTTAGTTGTCTTTAATGCCACCGCTGGAGCTTCC
TCTTGTTTTTTCCTATCTAAGTTGATTGGCAGGCCTTTAGTTAGTTGGTT
TTGGCCTGAAAAGTTAAGATTTTTCCAGGCAGAGGTACTTCTTATTTCCT
TGTGGTTATATTTTCAGATTTGAGTTTGCTTCTTTTTGTTAAAATGAATT
GGTTGCGTGCATTCAGATAGCAAAGCGCAGGGAAAAGTTGCTGAATTACA
TGCTCTTTTTGAGAATAACTCCTTCGTTGCCCAACCTTTTTATCAATTTG
GCATCTCCAATTGTCGACATACCATTTC
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