CV712488

Overview
NameCV712488
Unique NameCV712488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.547e-42
Identity = 77/137 (56.20%), Postives = 105/137 (76.64%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            N+ SGM V D  K  F EL+ K+ +R+++FKID         K G P E+Y+DF +++P+++CRYAVYDFD+ T +NCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RE++GI  E+QATDP+EM L+ ++ R N
Sbjct:    3 NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.326e-42
Identity = 82/136 (60.29%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            NA SGM V D  K  F EL+ K+ +R++I+KI+         K G P ESYEDF A LP ++CRYAVYDFD++T EN QKS+IFFIAWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  R+RA
Sbjct:    3 NAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.673e-42
Identity = 78/136 (57.35%), Postives = 104/136 (76.47%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            N+ SGM V D  K  F EL+ K+  R+++FKI+         + G P ESY+DF A LP ++CRYAV+DFD+VT ENCQKSKIFFI+W+P TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ +++RA
Sbjct:    3 NSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.409e-42
Identity = 81/135 (60.00%), Postives = 100/135 (74.07%), Query Frame = -3
Query:  351 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 755
            AT GM V +  +  F E++ KKVHR+V++KID         K GGP E YE+  AALP +DCRYAV+DFD+VT +NCQKSKIFFIAWSP+ SRIRAK+LYATSK   RR LDG+HYE+QATD +EM  + +R RA
Sbjct:    8 ATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRA 142          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.156e-41
Identity = 78/136 (57.35%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            N++SGM V D  K  F EL+ K+  R+++FKI+         + G P ESY+DF   LP N+CRYAV+DFD+VT ENCQKSKIFFI+WSP TSR+R+KMLYA++KDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:    3 NSSSGMAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.816e-41
Identity = 79/136 (58.09%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            NA SGM V D  K  F EL+ K+ +R++IF+ID           G P E+Y+DF A+LP N+CRYAV+DFD++T ENCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:    3 NAASGMAVEDECKLKFLELKSKRNYRFIIFRIDGQQVVVEKL--GNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF9_ORYSJ (Actin-depolymerizing factor 9 OS=Oryza sativa subsp. japonica GN=ADF9 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.677e-41
Identity = 81/137 (59.12%), Postives = 101/137 (73.72%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            N+ SG+ V D  K  F EL+ ++  R+++FKID         + G  AE YEDFAA LP ++CRYAVYD D+VT ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R RA+
Sbjct:    3 NSASGLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLPADECRYAVYDLDFVTDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIRARAH 139          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 79/135 (58.52%), Postives = 102/135 (75.56%), Query Frame = -3
Query:  351 ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 755
            AT+GM V D   ++F +++ KKVHRY++FKI+         K GG  ESY D   +LP +DCRYAV+DFD+VT +NC+KSKIFFIAWSP  S+IRAK+LYATSKD  RR L+GIHYE+QATDPTEM  + +++RA
Sbjct:    8 ATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRA 142          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.272e-41
Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            N+ SGM V D  K  F EL+ K+  R++ FKID         + G P ++Y+DF A++P ++CRYAV+DFD+VT ENCQKSKIFFI+WSP TS++R+KMLYA+SKDRF+RELDGI  E+QATDP+EM ++ ++ RA
Sbjct:    3 NSASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.272e-41
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            NA SGM V D  K  F EL+ K+  R +++KI+           G P +SY+DFAA+LP +DCRY +YDFD+VT+ENCQKSKIFFIAWSP T+++R KM+YA+SKDRF+RELDGI  E+QATDPTEM L+  ++R N
Sbjct:    3 NAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQVIVEKL--GEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
The following BLAST results are available for this feature:
BLAST of CV712488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF8_ARATH2.547e-4256.20Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF2_PETHY3.326e-4260.29Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ORYSJ5.673e-4257.35Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF5_ORYSJ7.409e-4260.00Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF_LILLO2.156e-4157.35Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH2.816e-4158.09Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF9_ORYSJ3.677e-4159.12Actin-depolymerizing factor 9 OS=Oryza sativa subs... [more]
ADF5_ARATH4.803e-4158.52Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF6_ORYSJ6.272e-4155.88Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF2_ARATH6.272e-4157.66Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712488 ID=CV712488; Name=CV712488; organism=Citrus sinensis; type=EST; length=850bp
AATCTTTTCTCTGGTCCACTTTCACATTATAGAAAATAAAATCAAGGAGG
AAGTACAAGGACAGCGAATATGAATTAGAGATCAATGTTACGATAATATG
TTCTAGGATTTCCAAATACCCAACAAACAAACTTATATTCATCAGAGTAG
CAATAAACCACTGGGAAGCTAATTTCACCACAACAAGATAACCTCAGCCC
AATCAGTCTTCCCACATTGCCAGTTATTCGAAGATTACGCATAGATTTTT
GCACATAGATTAATGAAGCAAGGAGCAACAGTTGGCAGAACCCCTTGCTG
ATTTTTTTTTCATGGAAGGAAGAAACTGCAAAACTGCAGACTCTTCAGTT
TGCACGGTTTCTAAGCTCTTCAAGATCCATCTCTGTAGGATCAGTAGCCT
GAATCTCATAGTGGATACCATCCAGCTCCCGTCGAAATCTGTCTTTAGAT
GTGGCGTACAGCATCTTGGCACGGATTCTAGAGGTTGAAGGGGACCATGC
AATGAAGAATATCTTGCTCTTCTGACAATTCTCAGAAGTCACATAGTCAA
AGTCATATACAGCATATCGACAATCATTCTCAGGCAAAGCAGCAGCGAAA
TCCTCGTAGCTCTCAGCGGGGCCACCAGTCTTCTCAACCACAACCTCCTT
TTTCTTCTCATCAATCTTAAAAATCACATAACGGTGAACCTTCTTCCTTT
GCAATTCCGTGAATGCATTTTTGCTGTGATCAGCAACGCCCATGCCAGAA
GTGGCATTTGGTCGACTTAGTCCTCTGAAAGACATGGCGGCGGCAGCAAC
AGAACGCAGATCACCAGAGCAAGTAAATAAACAATGAAAGAGAGCGAAAA
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