CV712488

Overview
NameCV712488
Unique NameCV712488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.192e-41
Identity = 76/137 (55.47%), Postives = 105/137 (76.64%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            NA SGM V D  K  F EL+ K+ HR++I+KI+         K G P +++ED AA+LP ++CRYA++DFD+V+SE   +S+IFF+AWSP T+R+R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL+  ++RAN
Sbjct:    3 NAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 75/129 (58.14%), Postives = 97/129 (75.19%), Query Frame = -3
Query:  351 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 737
            + D  K +F E++ KKVHRYV++K++         K G   ESY+D AA+LPE+DCRYAV+DFDYVT +NC+ SKIFFI WSP  SRIR KM+YATSK   RR LDG+HYE+QATDPTEM  +++++RA
Sbjct:    1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRA 129          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 79/136 (58.09%), Postives = 101/136 (74.26%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            NA SGM V D  K  F EL+ K+ +R++IF+ID           G P E+Y+DF   LP N+CRYAVYDFD+ T+EN QKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+ +++RA
Sbjct:    3 NAASGMAVEDECKLKFLELKAKRNYRFIIFRIDGQQVVVEKL--GSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.018e-39
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            N++SG+ V D  K  F EL+ ++  R+++F+ID         + G P + Y DF  +LP N+CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +R+R N
Sbjct:    3 NSSSGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSRTN 139          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.231e-38
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = -3
Query:  348 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 737
            V + SK+AF EL R+KVHRYVIFKID         KTG P ESY+DF A+LP +    AVYD D+V+ +NC+KSKIFFI+WSPS S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLE LR RAN
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 144          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.914e-38
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            N++SG+ V+D  K  F +L+ ++  R+++F+ID         + G P + Y DF  +LP ++CRYA+YD D+ T ENCQKSKIFF +WSP T+R R+KMLYA+SKDRFRRELDGI  EIQATDP+EM L+ +++R N
Sbjct:    3 NSSSGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSRTN 139          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.224e-36
Identity = 72/127 (56.69%), Postives = 98/127 (77.17%), Query Frame = -3
Query:  351 DHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 731
            D+ K  F EL +K++ R++IF+ID           G P E+Y+DF A+LP ++CRYAV+DFD+ T+ENCQKSKIFFIAWSP +SR+R KM+YA+SKDRF+RELDGI  E+QATDP+EM  + +++RA
Sbjct:    2 DNCKLKFLEL-KKRIFRFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.036e-35
Identity = 68/136 (50.00%), Postives = 100/136 (73.53%), Query Frame = -3
Query:  351 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 758
            NA SG+ V D     F ELQ K++HR++ FK+D         + G  A SY+DF  +LPENDCRYA+YDFD+VT+E+ QKS+IF+I WSPS++++++KMLYA+S  +F+  L+GI  E+QATD +E+ L+E+++RA
Sbjct:    3 NARSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRA 138          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.427e-34
Identity = 64/135 (47.41%), Postives = 97/135 (71.85%), Query Frame = -3
Query:  354 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 758
            N++SG+ + D  K  F ELQ K++HR++ F +D         K G    SYEDF ++LPE DCR+A+YDFD++T+E+  KS+IF+I WSP  +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ L++R
Sbjct:    3 NSSSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDR 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = -3
Query:  348 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-----------NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 758
            NATSG+ V++  K  F EL+  + HR+V+FKID         + G     +++  A+LP + CRYAVYD D+  S+              +SKIFF++WSP+ + +R+KM+YA+S + F++ELDG+  ++QATDP+E+ L+ L++  +
Sbjct:    3 NATSGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKDHTS 150          
The following BLAST results are available for this feature:
BLAST of CV712488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF3_ARATH8.192e-4155.47Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF9_ARATH6.935e-4058.14Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF12_ARATH6.935e-4058.09Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]
ADF1_MAIZE2.018e-3954.74Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF8_ORYSJ2.231e-3861.54Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF2_MAIZE2.914e-3852.55Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF_BRANA1.224e-3656.69Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF3_MAIZE1.036e-3550.00Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ7.427e-3447.41Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ1.772e-2738.51Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712488 ID=CV712488; Name=CV712488; organism=Citrus sinensis; type=EST; length=850bp
AATCTTTTCTCTGGTCCACTTTCACATTATAGAAAATAAAATCAAGGAGG
AAGTACAAGGACAGCGAATATGAATTAGAGATCAATGTTACGATAATATG
TTCTAGGATTTCCAAATACCCAACAAACAAACTTATATTCATCAGAGTAG
CAATAAACCACTGGGAAGCTAATTTCACCACAACAAGATAACCTCAGCCC
AATCAGTCTTCCCACATTGCCAGTTATTCGAAGATTACGCATAGATTTTT
GCACATAGATTAATGAAGCAAGGAGCAACAGTTGGCAGAACCCCTTGCTG
ATTTTTTTTTCATGGAAGGAAGAAACTGCAAAACTGCAGACTCTTCAGTT
TGCACGGTTTCTAAGCTCTTCAAGATCCATCTCTGTAGGATCAGTAGCCT
GAATCTCATAGTGGATACCATCCAGCTCCCGTCGAAATCTGTCTTTAGAT
GTGGCGTACAGCATCTTGGCACGGATTCTAGAGGTTGAAGGGGACCATGC
AATGAAGAATATCTTGCTCTTCTGACAATTCTCAGAAGTCACATAGTCAA
AGTCATATACAGCATATCGACAATCATTCTCAGGCAAAGCAGCAGCGAAA
TCCTCGTAGCTCTCAGCGGGGCCACCAGTCTTCTCAACCACAACCTCCTT
TTTCTTCTCATCAATCTTAAAAATCACATAACGGTGAACCTTCTTCCTTT
GCAATTCCGTGAATGCATTTTTGCTGTGATCAGCAACGCCCATGCCAGAA
GTGGCATTTGGTCGACTTAGTCCTCTGAAAGACATGGCGGCGGCAGCAAC
AGAACGCAGATCACCAGAGCAAGTAAATAAACAATGAAAGAGAGCGAAAA
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