CV712488

Overview
NameCV712488
Unique NameCV712488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = -3
Query:  351 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 749
            SG+ V+D     F EL+    HRYV FK++           GGP  +YEDF + LPE DCRYA++D+++   +  Q++KI FI W+P ++ I++KM+Y ++KD  +++L GI  E+QATD  E+  + +  RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ V D +  AF EL+  K   ++I+KI+         + G   +SY+ F   LPENDCRYAVYDF+Y ++S   ++SK+ F  WSP T+ +R+KM+YA+SKD  RR L GI  EIQ TD +E+  E +  R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  348 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKT-----GGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 743
            M + D  K  F EL+ ++  R +++KI+                G   +SYE+FA +LP ++CRYA+ D ++V  E     KI FIAWSPST+++R KM+Y+++KDRF+RELDGI  E  ATD T++ L+ +R R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S  AF +L+  K +++V++ I          +T   ++SY++F   LPENDC YA+YDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L G+  +IQ TD +E+  E +  R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETS-TSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S NAF +L+  K ++++++ ++         +T    + Y+ F   LPENDC YAVYDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  +IQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 56/135 (41.48%), Postives = 83/135 (61.48%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S  AF +L+    +++V+F ++         +T     SY+ F   LPENDC YAVYDF+Y  SE+  ++SKI F  WSP T+ +R KM+YA+SKD  +R L+G+  EIQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 52/135 (38.52%), Postives = 86/135 (63.70%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S  AF +L+  K ++++IF ++         +T   ++ Y+ F   LPEN+C+YA+YDF+Y +     ++SKI F  WSP T+ I++KM+YA+SKD  RR L+G+  ++Q TD +E+  E + +R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 52/135 (38.52%), Postives = 83/135 (61.48%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S  AF +L+  K +++++F ++         +T     SY+ F   LPENDC YA+YDF+Y +     ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  ++Q TD +E+  + +  R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 55/130 (42.31%), Postives = 82/130 (63.08%), Query Frame = -3
Query:  363 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 749
            SG+ V+D +  AF +L+  K  + +I+K++          T    ++Y+ F   LPENDCRYAVYDF+Y   + + +++KI F  WSP T+ +RAKM+YA+SKD  RR L+GI  EIQ TD +E+  E +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESV 132          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = -3
Query:  348 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 749
            SG+ VAD S  AF +L+  K +++V+F ++         +T    + Y+ F   LPE+DC YAVYDF+Y ++    ++SKI F  WSP T+ IR+KM+YA+SKD  RR L+G+  +IQ TD +E+  E +  + +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
The following BLAST results are available for this feature:
BLAST of CV712488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ACTP_ACACA3.127e-2439.85Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YARLI6.967e-2443.70Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
ADF11_ARATH9.099e-2441.61Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_ZYGRO2.027e-2341.48Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_KLULA5.898e-2340.00Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_CANGA1.716e-2241.48Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_DEBHA2.241e-2238.52Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_YEAST2.927e-2238.52Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_PICAN3.823e-2242.31Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO8.517e-2240.00Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712488 ID=CV712488; Name=CV712488; organism=Citrus sinensis; type=EST; length=850bp
AATCTTTTCTCTGGTCCACTTTCACATTATAGAAAATAAAATCAAGGAGG
AAGTACAAGGACAGCGAATATGAATTAGAGATCAATGTTACGATAATATG
TTCTAGGATTTCCAAATACCCAACAAACAAACTTATATTCATCAGAGTAG
CAATAAACCACTGGGAAGCTAATTTCACCACAACAAGATAACCTCAGCCC
AATCAGTCTTCCCACATTGCCAGTTATTCGAAGATTACGCATAGATTTTT
GCACATAGATTAATGAAGCAAGGAGCAACAGTTGGCAGAACCCCTTGCTG
ATTTTTTTTTCATGGAAGGAAGAAACTGCAAAACTGCAGACTCTTCAGTT
TGCACGGTTTCTAAGCTCTTCAAGATCCATCTCTGTAGGATCAGTAGCCT
GAATCTCATAGTGGATACCATCCAGCTCCCGTCGAAATCTGTCTTTAGAT
GTGGCGTACAGCATCTTGGCACGGATTCTAGAGGTTGAAGGGGACCATGC
AATGAAGAATATCTTGCTCTTCTGACAATTCTCAGAAGTCACATAGTCAA
AGTCATATACAGCATATCGACAATCATTCTCAGGCAAAGCAGCAGCGAAA
TCCTCGTAGCTCTCAGCGGGGCCACCAGTCTTCTCAACCACAACCTCCTT
TTTCTTCTCATCAATCTTAAAAATCACATAACGGTGAACCTTCTTCCTTT
GCAATTCCGTGAATGCATTTTTGCTGTGATCAGCAACGCCCATGCCAGAA
GTGGCATTTGGTCGACTTAGTCCTCTGAAAGACATGGCGGCGGCAGCAAC
AGAACGCAGATCACCAGAGCAAGTAAATAAACAATGAAAGAGAGCGAAAA
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