CV712488

Overview
NameCV712488
Unique NameCV712488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 48/135 (35.56%), Postives = 82/135 (60.74%), Query Frame = -3
Query:  348 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN 752
            +SG+ V+    + F EL+  K  +Y+I+ ++          T   + SY+DF A LP  +CRYA+YDF+Y   +  +++KI F +WSP  ++I+ KM++A+SKD  R+ L GI  EIQ TD +E+  + + ++ +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = -3
Query:  369 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 749
            SG+ V+     AF EL+  K  RYV+FK++         K     + ++ F   LPE DCRYA+YDF++   E   ++KI FI+WSP  + I++KM+Y++SKD  RR   GI  +IQATD +E+  E
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYE 128          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = -3
Query:  378 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 752
            +SG+ +A +  + F +L+  + +  +I++I           T     S+++F   LPEN+CRY V D+ Y   E  QKSKI F+AW P T+ I+ KM+  +SKD  R+   GI  EIQ TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = -3
Query:  351 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 752
            +SG+         F EL+  K   YVI+ +          K     + ++ F A LPE DCR+AVYDF++ +      ++K+ FI WSP  + ++ KM++A+SK+  RR LDGIH EIQATD +E+  + L  +A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 48/140 (34.29%), Postives = 79/140 (56.43%), Query Frame = -3
Query:  354 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPE---NDCRYAVYDFDYV-----TSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 749
            SG+ V+D  K  + E+++ K HRYVIF I               AE Y+ F   + +    +CRY ++DF+Y+     TSE+ +K K+F ++W P T++++ KMLY++S D  ++ L G+   IQATD +E   E +  +
Sbjct:    3 SGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  354 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNR 614
            ES+ED+    P++DCRY VYDF Y+ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD TE+    +  R
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 42/135 (31.11%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  360 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELR 749
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + KMLYA+SK+   R+++GI   ++ T   E   +ELR
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELR 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 42/135 (31.11%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  360 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXKT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELR 749
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + KMLYA+SK+   R+++GI   ++ T   E   +ELR
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDELR 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  375 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 614
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  375 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 614
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
The following BLAST results are available for this feature:
BLAST of CV712488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COFI_USTMA1.041e-1935.56Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO1.503e-1840.94Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COF1_DICDI1.662e-1736.80Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COFI_CRYNE3.703e-1737.04Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
CADF_DROME6.316e-1734.29Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF4_DICDI1.456e-1339.08Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
CADF2_PLAFX7.227e-1331.11Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF77.227e-1331.11Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
DEST_PIG9.438e-1337.50Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN9.438e-1337.50Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712488 ID=CV712488; Name=CV712488; organism=Citrus sinensis; type=EST; length=850bp
AATCTTTTCTCTGGTCCACTTTCACATTATAGAAAATAAAATCAAGGAGG
AAGTACAAGGACAGCGAATATGAATTAGAGATCAATGTTACGATAATATG
TTCTAGGATTTCCAAATACCCAACAAACAAACTTATATTCATCAGAGTAG
CAATAAACCACTGGGAAGCTAATTTCACCACAACAAGATAACCTCAGCCC
AATCAGTCTTCCCACATTGCCAGTTATTCGAAGATTACGCATAGATTTTT
GCACATAGATTAATGAAGCAAGGAGCAACAGTTGGCAGAACCCCTTGCTG
ATTTTTTTTTCATGGAAGGAAGAAACTGCAAAACTGCAGACTCTTCAGTT
TGCACGGTTTCTAAGCTCTTCAAGATCCATCTCTGTAGGATCAGTAGCCT
GAATCTCATAGTGGATACCATCCAGCTCCCGTCGAAATCTGTCTTTAGAT
GTGGCGTACAGCATCTTGGCACGGATTCTAGAGGTTGAAGGGGACCATGC
AATGAAGAATATCTTGCTCTTCTGACAATTCTCAGAAGTCACATAGTCAA
AGTCATATACAGCATATCGACAATCATTCTCAGGCAAAGCAGCAGCGAAA
TCCTCGTAGCTCTCAGCGGGGCCACCAGTCTTCTCAACCACAACCTCCTT
TTTCTTCTCATCAATCTTAAAAATCACATAACGGTGAACCTTCTTCCTTT
GCAATTCCGTGAATGCATTTTTGCTGTGATCAGCAACGCCCATGCCAGAA
GTGGCATTTGGTCGACTTAGTCCTCTGAAAGACATGGCGGCGGCAGCAAC
AGAACGCAGATCACCAGAGCAAGTAAATAAACAATGAAAGAGAGCGAAAA
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