CV712488

Overview
NameCV712488
Unique NameCV712488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  396 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 614
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = -3
Query:  363 AFTELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYEDFAAALPENDC-----------RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 716
            AF +L+  K ++++++K+          K    +  +EDF   L                RYAVYDF+Y + S +  ++KI FIAWSP  + I+ KM+YA+SK+  +R L GI  E+QA D  +++ + +
Sbjct:    6 AFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSI 134          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  351 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 614
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  351 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 614
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  351 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 614
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  351 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 614
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  399 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 614
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  351 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 614
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = -3
Query:  399 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 614
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of CV712488 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.764e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = -3
Query:  399 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 614
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++   GI +E Q
Sbjct:   66 DPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of CV712488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COF1_BOVIN2.103e-1243.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COFI_GIBZE7.990e-1232.31Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_PIG1.363e-1137.50Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE1.363e-1137.50Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN1.363e-1137.50Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN1.363e-1137.50Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1A_XENLA1.780e-1143.06Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF2_CHICK2.325e-1137.50Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1B_XENLA2.325e-1143.06Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF1_XENTR6.764e-1141.67Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712488 ID=CV712488; Name=CV712488; organism=Citrus sinensis; type=EST; length=850bp
AATCTTTTCTCTGGTCCACTTTCACATTATAGAAAATAAAATCAAGGAGG
AAGTACAAGGACAGCGAATATGAATTAGAGATCAATGTTACGATAATATG
TTCTAGGATTTCCAAATACCCAACAAACAAACTTATATTCATCAGAGTAG
CAATAAACCACTGGGAAGCTAATTTCACCACAACAAGATAACCTCAGCCC
AATCAGTCTTCCCACATTGCCAGTTATTCGAAGATTACGCATAGATTTTT
GCACATAGATTAATGAAGCAAGGAGCAACAGTTGGCAGAACCCCTTGCTG
ATTTTTTTTTCATGGAAGGAAGAAACTGCAAAACTGCAGACTCTTCAGTT
TGCACGGTTTCTAAGCTCTTCAAGATCCATCTCTGTAGGATCAGTAGCCT
GAATCTCATAGTGGATACCATCCAGCTCCCGTCGAAATCTGTCTTTAGAT
GTGGCGTACAGCATCTTGGCACGGATTCTAGAGGTTGAAGGGGACCATGC
AATGAAGAATATCTTGCTCTTCTGACAATTCTCAGAAGTCACATAGTCAA
AGTCATATACAGCATATCGACAATCATTCTCAGGCAAAGCAGCAGCGAAA
TCCTCGTAGCTCTCAGCGGGGCCACCAGTCTTCTCAACCACAACCTCCTT
TTTCTTCTCATCAATCTTAAAAATCACATAACGGTGAACCTTCTTCCTTT
GCAATTCCGTGAATGCATTTTTGCTGTGATCAGCAACGCCCATGCCAGAA
GTGGCATTTGGTCGACTTAGTCCTCTGAAAGACATGGCGGCGGCAGCAAC
AGAACGCAGATCACCAGAGCAAGTAAATAAACAATGAAAGAGAGCGAAAA
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