CV712486

Overview
NameCV712486
Unique NameCV712486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL1_ARATH (Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 57/215 (26.51%), Postives = 101/215 (46.98%), Query Frame = 2
Query:  170 WVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVW-KIDFWGDVEHALLDNKKCG-RIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDL-PHHLKSCLLY 805
            WV V K  + + +   + K      G+    E   + E +    +   L  + ++++ DD+W K++   +V      +++ G +++ TTR  +V    +   P+   E+  L PNEAW+LF  K            ++ EL++ + GKC GLPLA+  +G  ++ K R+V EW+   D L S     P ++    +L   Y +L    +K C LY
Sbjct:  212 WVVVSKSPDIHRIQGDIGKRL-DLGGE----EWDNVNENQRALDIYNVLGKQKFVLLLDDIWEKVNL--EVLGVPYPSRQNGCKVVFTTRSRDVCGRMRVDDPM---EVSCLEPNEAWELFQMKVGENTLKGHP--DIPELARKVAGKCCGLPLALNVIGETMACK-RMVQEWRNAIDVLSSYAAEFPGMEQILPILKYSYDNLNKEQVKPCFLY 413          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: R1B13_SOLDE (Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 55/177 (31.07%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  125 LFNNDGLKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAK-ACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLL 652
            L+++  + + F   A   V + Y+  ELL  ++ +     G     EIH  E   L   LR  L  + Y+++ DDVW+   W D+     D     RII+TTRH  VAK A   S P+H+   E    +E+WKL  ++             LK++   I   C  LPL+IV V  +L
Sbjct:  576 LYSDRSIVSQFDICAQCCVSQVYSYKELLLALLCDAIG-EGSDQHREIHANE---LADMLRKTLLPRRYLILVDDVWENSAWDDLRGCFPDVNNRSRIILTTRHHEVAKYASVHSEPLHLRMFE---EDESWKLLEKRVFGEESCSPL---LKDVGLRIAKMCRQLPLSIVLVADVL 742          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL28_ARATH (Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 60/231 (25.97%), Postives = 101/231 (43.72%), Query Frame = 2
Query:  131 NNDGLK----THFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKD-KNYMVVFDDVWK-IDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKDCNRVLSEGYHDLPHHLKSCLLY 805
            NND LK      F+   WVTV K+++   +   + K               + +  +L  T+   L D KN++++ DDVW  ID         L+  K  ++++T+R + V +   ++  + +     L   EAW+LFC               +K +++D+  +C GLPLAI+ +G  L  K + V  WK   + L     S    +     L   Y  L  ++KSC L+
Sbjct:  155 NNDLLKYAATQQFALVIWVTVSKDFDLKRVQMDIAKRLGK--------RFTREQMNQLGLTICERLIDLKNFLLILDDVWHPIDLDQLGIPLALERSKDSKVVLTSRRLEVCQQMMTNENIKV---ACLQEKEAWELFCHNVGEVANSD----NVKPIAKDVSHECCGLPLAIITIGRTLRGKPQ-VEVWKHTLNLLKRSAPSIDTEEKIFGTLKLSYDFLQDNMKSCFLF 369          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL17_ARATH (Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.825e-11
Identity = 57/225 (25.33%), Postives = 99/225 (44.00%), Query Frame = 2
Query:  143 LKTHFSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKME-EMELITTLRGHLKDKNYMVVFDDVW-KIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHL-KDCNRVLSEGYHDL-PHHLKSCLLY 805
            + + F    W+ V K    ++L   + ++ H         ++ K + E +  T +   LK K ++++ DD+W K+D          +  KC ++  TTR   V        P+ +  LE   P +AW+LF  K             + EL++++  KC GLPLA+  +G  +++K  +V EW+   D L        ++      +L   Y  L   H+KSC LY
Sbjct:   88 MSSRFDIVIWIVVSKGAKLSKLQEDIAEKLHLCD------DLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNKC-KVAFTTRDQKVCGEMGDHKPMQVKCLE---PEDAWELFKNKVGDNTLRSDPV--IVELAREVAQKCRGLPLALSVIGETMASKT-MVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFLY 299          
BLAST of CV712486 vs. ExPASy Swiss-Prot
Match: DRL19_ARATH (Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.230e-11
Identity = 60/219 (27.40%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  155 FSSRAWVTVGKEYNKNELLRTVIKEFHSFSGQPTPVEIHKMEEMELITTLRGHLKDKNYMVVFDDVWKIDFWGDVEHALLDNKKCGRIIVTTRHMNVAKACKSSSPVHIHELETLPPNEAWKLFCRKAXXXXXXXXXXXELKELSQDILGKCEGLPLAIVAVGGLLSTKNRVVSEWKKLFDRLGSILGSDPHLKD-CNRVLSEGYHDLP-HHLKSCLLY 805
            F S  WV V KE N   +L  + ++ H  SG+    +    + + L   LR       +++  DD+W+     ++       K   +++ TTR ++V  +     P+   E++ L  N+A+ LF +K            E++ELS+ +  KC GLPLA+  V   +S K R V EW+     L S       + D    +L   Y  L    +K CLLY
Sbjct:  203 FDSVIWVVVSKEVNVENILDEIAQKVH-ISGEKWDTKYKYQKGVYLYNFLR----KMRFVLFLDDIWEKVNLVEIGVPFPTIKNKCKVVFTTRSLDVCTSMGVEKPM---EVQCLADNDAYDLFQKKVGQITLGSDP--EIRELSRVVAKKCCGLPLALNVVSETMSCK-RTVQEWRHAIYVLNSYAAKFSGMDDKILPLLKYSYDSLKGEDVKMCLLY 410          
The following BLAST results are available for this feature:
BLAST of CV712486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
DRL1_ARATH4.364e-1226.51Probable disease resistance protein At1g12280 OS=A... [more]
R1B13_SOLDE1.658e-1131.07Putative late blight resistance protein homolog R1... [more]
DRL28_ARATH2.829e-1125.97Probable disease resistance protein At4g27220 OS=A... [more]
DRL17_ARATH4.825e-1125.33Probable disease resistance protein At1g61300 OS=A... [more]
DRL19_ARATH8.230e-1127.40Putative disease resistance protein At1g63350 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712486 ID=CV712486; Name=CV712486; organism=Citrus sinensis; type=EST; length=810bp
GTTGTGGGGGATCGAATCCATTAAACGTAAATTGATTGATTTGATGGTGA
ACGGAAGATCCGAACGTTCAGTGGTTGCTGTGGTGGGTGTAGGAGGGCTA
GGCAAGACCACTCTTGCTGGAAAACTTTTTAACAATGATGGTTTAAAAAC
TCACTTCAGTAGCCGGGCTTGGGTCACCGTTGGGAAAGAATACAACAAAA
ATGAATTGTTGAGGACAGTTATAAAGGAGTTTCACAGTTTCTCAGGGCAG
CCTACTCCAGTCGAGATACACAAAATGGAAGAGATGGAGCTGATCACCAC
GCTGAGGGGCCACTTGAAGGACAAGAATTACATGGTTGTGTTCGACGATG
TTTGGAAGATTGATTTTTGGGGAGACGTGGAGCATGCTTTACTTGATAAC
AAGAAATGCGGCAGGATAATTGTCACAACACGGCACATGAATGTCGCTAA
GGCTTGCAAATCATCTTCCCCTGTTCATATCCATGAGCTTGAAACTTTGC
CTCCGAATGAAGCGTGGAAACTTTTTTGTAGAAAGGCTTCCGGACCAAGC
TCCGGAGGCTGTTGTCCTTCAGAGTTGAAGGAGTTGTCCCAGGACATCCT
TGGAAAATGTGAAGGTTTGCCTCTTGCTATCGTGGCCGTAGGTGGACTTC
TTTCAACCAAGAACAGGGTTGTATCTGAATGGAAGAAATTATTTGATCGG
TTGGGCTCAATCTTAGGAAGTGATCCCCATCTAAAAGACTGCAACAGAGT
TTTATCTGAAGGATATCATGATCTTCCTCACCATCTCAAATCATGTCTTC
TGTACTTTGG
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