CV712478

Overview
NameCV712478
Unique NameCV712478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_CRYNE (Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.245e-34
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  229 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSS 543
            +RSS+AGLQFPVGR+HR L+              VY A+I+EYLTAEVLELAGNA+KDL+VKRITPRHLQLAIRGDEELD LI+ TIAGGGV+PHIHKSL+ K++
Sbjct:   24 TRSSKAGLQFPVGRIHRFLRNKNANNVRIGAKAAVYVASIMEYLTAEVLELAGNAAKDLRVKRITPRHLQLAIRGDEELDLLIRATIAGGGVLPHIHKSLVAKNA 128          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_SCHPO (Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.073e-34
Identity = 74/108 (68.52%), Postives = 87/108 (80.56%), Query Frame = -3
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            +S S+RAGLQFPVGRV R LK              VY+AA+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIAGGGV+PHI+K L+ ++ ++
Sbjct:   25 MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLLIRTKEK 132          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_LODEL (Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGRV R LK+             +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRVKRYLKKQAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_CANAL (Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 73/107 (68.22%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGRV R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRVKRYLKRNAQNKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGR+ R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_PICGU (Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGR+ R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRSAQNKVRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAYGGVLPHINKALLLKVEKK 129          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGR+ R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELD LIK TIA GGV+PHI+K+L+ K  K+
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIKATIAFGGVLPHINKALLLKVEKK 129          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = -3
Query:  235 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 543
            S SSRAGLQFPVGR+ R +K+             +Y AA+LEYLTAEVLELAGNA++DLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+K+L+ K
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLIQATIAYGGVMPHINKALLLK 133          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGRV R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = -3
Query:  223 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 543
            S S+RAGLQFPVGR+ R LK+             +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130          
The following BLAST results are available for this feature:
BLAST of CV712478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AZ_CRYNE1.245e-3469.52Histone H2A.Z OS=Cryptococcus neoformans GN=HTZ1 P... [more]
H2AZ_SCHPO8.073e-3468.52Histone H2A.Z OS=Schizosaccharomyces pombe GN=pht1... [more]
H2AZ_LODEL2.597e-3268.22Histone H2A.Z OS=Lodderomyces elongisporus GN=HTZ1... [more]
H2AZ_CANAL3.392e-3268.22Histone H2A.Z OS=Candida albicans GN=HTZ1 PE=3 SV=... [more]
H2AZ_PICST4.430e-3267.29Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_PICGU4.430e-3267.29Histone H2A.Z OS=Pichia guilliermondii GN=HTZ1 PE=... [more]
H2AZ_DEBHA4.430e-3267.29Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_YARLI5.785e-3268.93Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_KLULA5.785e-3266.36Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]
H2AZ_ASHGO5.785e-3265.42Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712478 ID=CV712478; Name=CV712478; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTCTAAAATTATTTAAAAATTAAACAGTAACAGTTAAA
TACCAACATGCGAAAAACAAGCACCACAATTCGTCGCTGCATGAAATGAA
GATTGAAGAATGCAGATTCCTAGCATTAACACATCTCTGGCATCATTTCT
CATTTAGATATTTCAGCACAGCTAAAAGTACACACATAAACAAAGCCGAG
AGGATGATGGTGTCACGAACTACTCTTTGGAGGATTTATTGATGAGGGAC
TTGTGGATATGAGGAATAACTCCTCCACCGGCTATGGTTCCTTTAATGAG
AGTGTCAAGTTCTTCATCTCCTCGGATAGCAAGCTGCAAATGCCTTGGAG
TAATACGTTTGACCTTCAAATCCTTGCTAGCATTCCCTGCCAACTCCAAC
ACTTCGGCAGTTAGATACTCCAAAATGGCTGCTGTATAAACAGCAGCTGT
TGCACCAACCCTTCCGTGAGCAGCAGCCCTTTCCTTTAGCAGACGATGGA
CCCTTCCCACTGGGAACTGAAGACCAGCACGAGAAGAACGGGAGACGGGT
TTCTTCTTGTCCTTATCCTTGTTGTTGTTAATGGTGGTTTTGCCTGTTAT
CAGTCCTTTGGCTCCTTTGCCCGACATTTTCCCGCCTAATTTCTACAGCT
TCTTTTAAATTAATTAATTATTTATTTAATTATTTTTAATTTTTTCTGAG
ATGAAAATTATCGGAGAGGAAAGAAAGAGATAAAGCTAAGCGAGCGTTTG
AGCCT
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