CV712472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1) HSP 1 Score: 388.652 bits (997), Expect = 2.465e-107 Identity = 188/216 (87.04%), Postives = 206/216 (95.37%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 726 MGQKINP+GFRLGTTQ HHSLWFA+PKNY EGLQEDQKIRN+IKNY++KN++ SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+QKE N VNRK+NIAITRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF++ Sbjct: 1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRNYIKNYVQKNMKTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNLQKEFNSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIE 216
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1) HSP 1 Score: 387.111 bits (993), Expect = 7.173e-107 Identity = 186/218 (85.32%), Postives = 207/218 (94.95%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1) HSP 1 Score: 387.111 bits (993), Expect = 7.173e-107 Identity = 186/218 (85.32%), Postives = 207/218 (94.95%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 9.368e-107 Identity = 190/216 (87.96%), Postives = 204/216 (94.44%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 726 MGQKINPLGFRLGTTQ HHSLWFA+PKNY EGLQEDQKIR+FIKNY++KN++ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+QKE VN+K+NIAITRI PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNLQKEFKSVNQKLNIAITRIAKPYGSPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFID 216
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_BUXMI (30S ribosomal protein S3, chloroplastic OS=Buxus microphylla GN=rps3 PE=3 SV=1) HSP 1 Score: 385.571 bits (989), Expect = 2.087e-106 Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWFA+PK+Y EGLQEDQKIR+ IKNY++KN+RISSG EGIARIEIQKRIDLIQVIIY+GFPKLL+E RPR +EELQ+NVQKE N VNRK+NIAITRI PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKI YCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFAQPKSYSEGLQEDQKIRDCIKNYVQKNMRISSGAEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRPRGVEELQINVQKEFNSVNRKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIYYCSYTVRTIYGVLGIKIWIFVDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_TOBAC (30S ribosomal protein S3, chloroplastic OS=Nicotiana tabacum GN=rps3 PE=3 SV=1) HSP 1 Score: 385.185 bits (988), Expect = 2.726e-106 Identity = 187/218 (85.78%), Postives = 206/218 (94.50%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ +QKE +CVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NICSY (30S ribosomal protein S3, chloroplastic OS=Nicotiana sylvestris GN=rps3 PE=3 SV=1) HSP 1 Score: 385.185 bits (988), Expect = 2.726e-106 Identity = 187/218 (85.78%), Postives = 206/218 (94.50%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ +QKE +CVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NICTO (30S ribosomal protein S3, chloroplastic OS=Nicotiana tomentosiformis GN=rps3 PE=3 SV=1) HSP 1 Score: 384.415 bits (986), Expect = 4.649e-106 Identity = 186/218 (85.32%), Postives = 206/218 (94.50%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEI+KRIDLIQVII++GFPKLL+E+RPR IEELQ +QKE NCVNRK+NIA+TRI PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D++ Sbjct: 1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIKKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDQE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NANDO (30S ribosomal protein S3, chloroplastic OS=Nandina domestica GN=rps3 PE=3 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 1.353e-105 Identity = 189/218 (86.70%), Postives = 203/218 (93.12%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQSHHSLWFA+PKNY EGLQEDQKI++ I+NY++KN+RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E R R IEELQ +VQK N VNRK+NIAITRI PYGHPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF DE+ Sbjct: 1 MGQKINPLGFRLGTTQSHHSLWFAQPKNYSEGLQEDQKIQDCIRNYVQKNMRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRSRGIEELQSSVQKRFNSVNRKLNIAITRIAKPYGHPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_POPAL (30S ribosomal protein S3, chloroplastic OS=Populus alba GN=rps3 PE=3 SV=1) HSP 1 Score: 382.489 bits (981), Expect = 1.767e-105 Identity = 184/218 (84.40%), Postives = 207/218 (94.95%), Query Frame = 1 Query: 79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732 MGQKINPLGFRLGTTQ H+SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+ Sbjct: 1 MGQKINPLGFRLGTTQDHYSLWFAQPKNFSEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218 The following BLAST results are available for this feature:
BLAST of CV712472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712472 ID=CV712472; Name=CV712472; organism=Citrus sinensis; type=EST; length=893bpback to top |