CV712472

Overview
NameCV712472
Unique NameCV712472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 2.465e-107
Identity = 188/216 (87.04%), Postives = 206/216 (95.37%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 726
            MGQKINP+GFRLGTTQ HHSLWFA+PKNY EGLQEDQKIRN+IKNY++KN++ SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+QKE N VNRK+NIAITRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF++
Sbjct:    1 MGQKINPIGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRNYIKNYVQKNMKTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNLQKEFNSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIE 216          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 7.173e-107
Identity = 186/218 (85.32%), Postives = 207/218 (94.95%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 7.173e-107
Identity = 186/218 (85.32%), Postives = 207/218 (94.95%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQED+KIR+ IKNY++KN+R SSG+EGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQM +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDKKIRDCIKNYVQKNMRTSSGIEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQMTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 9.368e-107
Identity = 190/216 (87.96%), Postives = 204/216 (94.44%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 726
            MGQKINPLGFRLGTTQ HHSLWFA+PKNY EGLQEDQKIR+FIKNY++KN++ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+QKE   VN+K+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFAQPKNYSEGLQEDQKIRDFIKNYVQKNMKISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNLQKEFKSVNQKLNIAITRIAKPYGSPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFID 216          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_BUXMI (30S ribosomal protein S3, chloroplastic OS=Buxus microphylla GN=rps3 PE=3 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 2.087e-106
Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWFA+PK+Y EGLQEDQKIR+ IKNY++KN+RISSG EGIARIEIQKRIDLIQVIIY+GFPKLL+E RPR +EELQ+NVQKE N VNRK+NIAITRI  PYG PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKI YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFAQPKSYSEGLQEDQKIRDCIKNYVQKNMRISSGAEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRPRGVEELQINVQKEFNSVNRKLNIAITRIAKPYGQPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIYYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_TOBAC (30S ribosomal protein S3, chloroplastic OS=Nicotiana tabacum GN=rps3 PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 2.726e-106
Identity = 187/218 (85.78%), Postives = 206/218 (94.50%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE +CVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NICSY (30S ribosomal protein S3, chloroplastic OS=Nicotiana sylvestris GN=rps3 PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 2.726e-106
Identity = 187/218 (85.78%), Postives = 206/218 (94.50%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEIQKRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE +CVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIQKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFHCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NICTO (30S ribosomal protein S3, chloroplastic OS=Nicotiana tomentosiformis GN=rps3 PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 4.649e-106
Identity = 186/218 (85.32%), Postives = 206/218 (94.50%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ HHSLWF++PKNY EGLQEDQKIR+ IKNY++KN+R SSGVEGIARIEI+KRIDLIQVII++GFPKLL+E+RPR IEELQ  +QKE NCVNRK+NIA+TRI  PYG+PNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D++
Sbjct:    1 MGQKINPLGFRLGTTQGHHSLWFSQPKNYSEGLQEDQKIRDCIKNYVQKNMRTSSGVEGIARIEIKKRIDLIQVIIFMGFPKLLIESRPRGIEELQTTLQKEFNCVNRKLNIAVTRIAKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDQE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_NANDO (30S ribosomal protein S3, chloroplastic OS=Nandina domestica GN=rps3 PE=3 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 1.353e-105
Identity = 189/218 (86.70%), Postives = 203/218 (93.12%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQSHHSLWFA+PKNY EGLQEDQKI++ I+NY++KN+RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E R R IEELQ +VQK  N VNRK+NIAITRI  PYGHPNILAEFIAGQLKNRVSFRKA+KKAIELTEQADTKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF DE+
Sbjct:    1 MGQKINPLGFRLGTTQSHHSLWFAQPKNYSEGLQEDQKIQDCIRNYVQKNMRISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLIEGRSRGIEELQSSVQKRFNSVNRKLNIAITRIAKPYGHPNILAEFIAGQLKNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFTDEE 218          
BLAST of CV712472 vs. ExPASy Swiss-Prot
Match: RR3_POPAL (30S ribosomal protein S3, chloroplastic OS=Populus alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.767e-105
Identity = 184/218 (84.40%), Postives = 207/218 (94.95%), Query Frame = 1
Query:   79 MGQKINPLGFRLGTTQSHHSLWFAKPKNYCEGLQEDQKIRNFIKNYIKKNIRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNVQKELNCVNRKINIAITRITNPYGHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 732
            MGQKINPLGFRLGTTQ H+SLWFA+PKN+ EGLQEDQKIRN IKNY++KN++ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NVQKELNC+NRK+NI+ITRI NPY HPN+LAEFIAGQLKNRVSFRKAMKKAIELTEQ++TKGIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:    1 MGQKINPLGFRLGTTQDHYSLWFAQPKNFSEGLQEDQKIRNCIKNYVQKNMKISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINVQKELNCMNRKLNISITRIENPYMHPNVLAEFIAGQLKNRVSFRKAMKKAIELTEQSNTKGIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218          
The following BLAST results are available for this feature:
BLAST of CV712472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_HELAN2.465e-10787.0430S ribosomal protein S3, chloroplastic OS=Heliant... [more]
RR3_SOLTU7.173e-10785.3230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLBU7.173e-10785.3230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_PANGI9.368e-10787.9630S ribosomal protein S3, chloroplastic OS=Panax g... [more]
RR3_BUXMI2.087e-10687.1630S ribosomal protein S3, chloroplastic OS=Buxus m... [more]
RR3_TOBAC2.726e-10685.7830S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NICSY2.726e-10685.7830S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NICTO4.649e-10685.3230S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NANDO1.353e-10586.7030S ribosomal protein S3, chloroplastic OS=Nandina... [more]
RR3_POPAL1.767e-10584.4030S ribosomal protein S3, chloroplastic OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712472 ID=CV712472; Name=CV712472; organism=Citrus sinensis; type=EST; length=893bp
CAAAAACACTAGATTAATAAATAAAAAAAAGAAAAAAAAAACTATGACAT
GTCATGATACATATAGGAATGGGGGATTATGGGACAAAAAATAAATCCAC
TAGGTTTCCGGCTTGGTACAACACAAAGTCATCATTCTCTTTGGTTTGCA
AAACCAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAATACGAAA
CTTTATTAAGAATTATATAAAAAAAAATATCAGAATATCTTCCGGTGTTG
AGGGAATTGCACGGATAGAGATTCAAAAAAGAATTGATCTAATTCAAGTT
ATAATCTATATAGGGTTCCCAAAATTATTACTAGAAAATAGACCGCGAAG
AATTGAAGAATTACAGATGAATGTACAAAAAGAACTTAATTGTGTGAATC
GAAAAATAAACATTGCTATTACACGAATTACAAATCCTTATGGACACCCC
AATATTCTTGCCGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCTTT
TCGAAAAGCAATGAAAAAAGCTATTGAATTAACGGAACAGGCCGATACAA
AAGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCG
CGCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGC
TAAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGG
GAATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGT
CTTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCT
TTTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGT
TGAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCT
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