CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_CHAGL (30S ribosomal protein S15, chloroplastic OS=Chaetosphaeridium globosum GN=rps15 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  521 QEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 751
            + K     GS+E QV   T  ++ +++HL++++KDYSSQRGLRKIL KR+RLL YL KK+ ++YK +I  L IR  K
Sbjct:    9 ESKNINKIGSIEEQVVSLTQRVKFISNHLKINKKDYSSQRGLRKILGKRKRLLTYLYKKDFLKYKFVIQSLGIRSLK 85          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_PLAOC (Putative membrane protein ycf1 OS=Platanus occidentalis GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFSM R+HMYPRLKI
Sbjct: 1876 LWPNYRLEDLACMNRYWFDTNNGSRFSMSRIHMYPRLKI 1914          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_ANEMR (30S ribosomal protein S15, plastid OS=Aneura mirabilis GN=rps15 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.806e-13
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  536 KNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            K  GSVE Q+   TN I +LT H + HRKDYSSQRGL KIL +R+RLL YL + + + Y++L ++L IR+ K +
Sbjct:   16 KKDGSVESQICCLTNRIVKLTRHFQTHRKDYSSQRGLWKILGRRKRLLIYLLQTDAIGYRDLTTQLKIRKLKKK 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1848 LWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1886          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1848 LWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1886          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1853 LWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1891          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_CUCSA (Putative membrane protein ycf1 OS=Cucumis sativus GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL CMNRYWF+TNN SRFSM+R+HMYP+LKIR
Sbjct: 1840 LWPNYRLEDLACMNRYWFDTNNSSRFSMLRIHMYPQLKIR 1879          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_SOLLC (Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3
Query:    6 WANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1853 WPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1890          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL CMNRYWF+TNNGSRFSM+R+ +YPRLKIR
Sbjct: 1894 LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIRLYPRLKIR 1933          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_TOBAC (Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFS++R+HMYP+LKI
Sbjct: 1862 LWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RR15_CHAGL1.383e-1349.3530S ribosomal protein S15, chloroplastic OS=Chaeto... [more]
YCF1_PLAOC1.806e-1382.05Putative membrane protein ycf1 OS=Platanus occiden... [more]
RR15_ANEMR1.806e-1351.3530S ribosomal protein S15, plastid OS=Aneura mirab... [more]
YCF1_SOLTU2.359e-1379.49Putative membrane protein ycf1 OS=Solanum tuberosu... [more]
YCF1_SOLBU2.359e-1379.49Putative membrane protein ycf1 OS=Solanum bulbocas... [more]
YCF1_NICTO2.359e-1379.49Putative membrane protein ycf1 OS=Nicotiana toment... [more]
YCF1_CUCSA3.081e-1377.50Putative membrane protein ycf1 OS=Cucumis sativus ... [more]
YCF1_SOLLC4.024e-1381.58Putative membrane protein ycf1 OS=Solanum lycopers... [more]
YCF1_JASNU4.024e-1377.50Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]
YCF1_TOBAC6.864e-1376.92Putative membrane protein ycf1 OS=Nicotiana tabacu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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