CV712406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_TRIEI (30S ribosomal protein S15 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsO PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12 Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 2 Query: 533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742 E ++GS + QV T I +L++HL +++DYSSQRGL K++ KR+RLL Y+ K+N+ RYK LI++L IR Sbjct: 19 ETDTGSADVQVAMLTEKITKLSAHLRNNKQDYSSQRGLLKMIGKRKRLLTYIQKQNQERYKALITRLGIR 88
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_THELT (30S ribosomal protein S15 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsO PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12 Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2 Query: 533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742 EK++GS E QV T IR LT HL+ H KD+ S+RGL K++ +R++LL YL K N YK LI KLN+R Sbjct: 17 EKDTGSAEVQVAILTARIRHLTEHLKAHPKDFHSRRGLMKMVGRRRKLLRYLRKSNPESYKSLIEKLNLR 86
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12 Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 3 Query: 3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122 +W N RLEDL C+NRYWF+T NGSRFS+VR+HMYPRLK+R Sbjct: 1754 LWPNYRLEDLACINRYWFDTYNGSRFSIVRIHMYPRLKMR 1793
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119 +W N RLEDL CMNRYWF+TNNGSRFSM+R+HMYPR I Sbjct: 1838 LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHMYPRFII 1876
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_GEOKA (30S ribosomal protein S15 OS=Geobacillus kaustophilus GN=rpsO PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12 Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2 Query: 533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742 E ++GS E QV T I L HL +H+KD+ S+RGL K++ KR+ LLAYL KK+ RY+ELI KL +R Sbjct: 19 ENDTGSPEVQVAILTEQINNLNEHLRIHKKDHHSRRGLLKMVGKRRNLLAYLRKKDVARYRELIEKLGLR 88
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_MORIN (Putative membrane protein ycf1 OS=Morus indica GN=ycf1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12 Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 3 Query: 3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLK 116 +W N RLED CMNRYWF+TNNGSRFSMVR+HMYP+ K Sbjct: 1818 LWPNYRLEDFACMNRYWFDTNNGSRFSMVRIHMYPQFK 1855
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_ADICA (30S ribosomal protein S15, chloroplastic OS=Adiantum capillus-veneris GN=rps15 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2 Query: 539 NSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 751 N+G Q++ T + +LTSHLELH +DYSSQ GL K+L +R+RLLAYL KKN Y+ +++KL IR K Sbjct: 17 NTGFTASQIYYSTYQVSKLTSHLELHPRDYSSQIGLWKLLGRRKRLLAYLFKKNTGLYERVLTKLGIRGLK 87
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_DRANE (Putative membrane protein ycf1 OS=Draba nemorosa GN=ycf1-A PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12 Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 3 Query: 3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119 +W N RLEDL CMNRYWFNT NG+RFSM+R+HMY R KI Sbjct: 1741 LWPNFRLEDLACMNRYWFNTTNGNRFSMIRIHMYTRFKI 1779
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_DICT6 (30S ribosomal protein S15 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsO PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12 Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 2 Query: 533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745 E +SGS E Q+ T I+RLT HL++H+KDY S+ GL K++ +R++LL YL +K+ RYK+LI +L +R+ Sbjct: 19 ENDSGSPEVQIALLTERIKRLTEHLKVHKKDYHSRVGLLKMIGRRRKLLKYLQEKDFERYKKLIQELGLRK 89
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_NOSP7 (30S ribosomal protein S15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsO PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12 Identity = 33/70 (47.14%), Postives = 54/70 (77.14%), Query Frame = 2 Query: 533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742 E ++GS + QV T I RL+ HL+ ++KD+SS+RGL K++ +R+RLLAY+S+++R +Y+ LI++L IR Sbjct: 19 ETDTGSADVQVAMLTERINRLSEHLQANKKDHSSRRGLLKLIGQRKRLLAYISQESREKYQALIARLGIR 88 The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 209
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bpback to top |