CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_TRIEI (30S ribosomal protein S15 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsO PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS + QV   T  I +L++HL  +++DYSSQRGL K++ KR+RLL Y+ K+N+ RYK LI++L IR
Sbjct:   19 ETDTGSADVQVAMLTEKITKLSAHLRNNKQDYSSQRGLLKMIGKRKRLLTYIQKQNQERYKALITRLGIR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_THELT (30S ribosomal protein S15 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsO PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.171e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            EK++GS E QV   T  IR LT HL+ H KD+ S+RGL K++ +R++LL YL K N   YK LI KLN+R
Sbjct:   17 EKDTGSAEVQVAILTARIRHLTEHLKAHPKDFHSRRGLMKMVGRRRKLLRYLRKSNPESYKSLIEKLNLR 86          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL C+NRYWF+T NGSRFS+VR+HMYPRLK+R
Sbjct: 1754 LWPNYRLEDLACINRYWFDTYNGSRFSIVRIHMYPRLKMR 1793          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFSM+R+HMYPR  I
Sbjct: 1838 LWPNYRLEDLACMNRYWFDTNNGSRFSMLRIHMYPRFII 1876          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_GEOKA (30S ribosomal protein S15 OS=Geobacillus kaustophilus GN=rpsO PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.997e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS E QV   T  I  L  HL +H+KD+ S+RGL K++ KR+ LLAYL KK+  RY+ELI KL +R
Sbjct:   19 ENDTGSPEVQVAILTEQINNLNEHLRIHKKDHHSRRGLLKMVGKRRNLLAYLRKKDVARYRELIEKLGLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_MORIN (Putative membrane protein ycf1 OS=Morus indica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLK 116
            +W N RLED  CMNRYWF+TNNGSRFSMVR+HMYP+ K
Sbjct: 1818 LWPNYRLEDFACMNRYWFDTNNGSRFSMVRIHMYPQFK 1855          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_ADICA (30S ribosomal protein S15, chloroplastic OS=Adiantum capillus-veneris GN=rps15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.608e-12
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  539 NSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 751
            N+G    Q++  T  + +LTSHLELH +DYSSQ GL K+L +R+RLLAYL KKN   Y+ +++KL IR  K
Sbjct:   17 NTGFTASQIYYSTYQVSKLTSHLELHPRDYSSQIGLWKLLGRRKRLLAYLFKKNTGLYERVLTKLGIRGLK 87          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_DRANE (Putative membrane protein ycf1 OS=Draba nemorosa GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWFNT NG+RFSM+R+HMY R KI
Sbjct: 1741 LWPNFRLEDLACMNRYWFNTTNGNRFSMIRIHMYTRFKI 1779          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_DICT6 (30S ribosomal protein S15 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsO PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            E +SGS E Q+   T  I+RLT HL++H+KDY S+ GL K++ +R++LL YL +K+  RYK+LI +L +R+
Sbjct:   19 ENDSGSPEVQIALLTERIKRLTEHLKVHKKDYHSRVGLLKMIGRRRKLLKYLQEKDFERYKKLIQELGLRK 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_NOSP7 (30S ribosomal protein S15 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsO PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 33/70 (47.14%), Postives = 54/70 (77.14%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS + QV   T  I RL+ HL+ ++KD+SS+RGL K++ +R+RLLAY+S+++R +Y+ LI++L IR
Sbjct:   19 ETDTGSADVQVAMLTERINRLSEHLQANKKDHSSRRGLLKLIGQRKRLLAYISQESREKYQALIARLGIR 88          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RS15_TRIEI1.171e-1250.0030S ribosomal protein S15 OS=Trichodesmium erythra... [more]
RS15_THELT1.171e-1252.8630S ribosomal protein S15 OS=Thermotoga lettingae ... [more]
YCF1_LOTJA1.529e-1275.00Putative membrane protein ycf1 OS=Lotus japonicus ... [more]
YCF1_CHLSC1.997e-1276.92Putative membrane protein ycf1 OS=Chloranthus spic... [more]
RS15_GEOKA1.997e-1251.4330S ribosomal protein S15 OS=Geobacillus kaustophi... [more]
YCF1_MORIN2.608e-1276.32Putative membrane protein ycf1 OS=Morus indica GN=... [more]
RR15_ADICA2.608e-1252.1130S ribosomal protein S15, chloroplastic OS=Adiant... [more]
YCF1_DRANE3.406e-1274.36Putative membrane protein ycf1 OS=Draba nemorosa G... [more]
RS15_DICT63.406e-1247.8930S ribosomal protein S15 OS=Dictyoglomus thermoph... [more]
RS15_NOSP74.449e-1247.1430S ribosomal protein S15 OS=Nostoc punctiforme (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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