CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_FUSNN (30S ribosomal protein S15 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsO PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  527 KKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            K E ++GS E Q+   T  I  LT HL +H+KD+ S+ GL K++ +R+RLLAYL+KK+   Y+ LI+KL IR+
Sbjct:   13 KSEADTGSTEVQIALLTEKINHLTEHLRVHKKDFHSRLGLLKMVGQRKRLLAYLTKKDLEGYRALIAKLGIRK 85          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_POPAL (Putative membrane protein ycf1 OS=Populus alba GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL C+NRYWF+TNN SRFSM+R+H+ PRLKIR
Sbjct: 1781 LWPNYRLEDLACINRYWFDTNNASRFSMIRIHICPRLKIR 1820          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_IPOPU (Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL CMNRYWF+TNNGSRFS++R+HMY  LKIR
Sbjct: 2018 LWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYLPLKIR 2057          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_RUBXD (30S ribosomal protein S15 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  491 VKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            V+N   ++R     E ++GS E QV   T  I  LT HL  H+ DY S+RGL K++ KR+RLL YL KK+  RY+ LIS+L +R
Sbjct:    4 VENKEETIREFRTHEGDTGSPEVQVAILTRRIAHLTEHLREHKHDYHSRRGLLKMVGKRRRLLKYLQKKDVERYRTLISRLGLR 87          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_CHLAT (30S ribosomal protein S15, chloroplastic OS=Chlorokybus atmophyticus GN=rps15 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.811e-12
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  539 NSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            ++GS + QV   T  + +L+ HL+ H KDY+SQRGLRKIL  R++LL YLS K+ V Y+ LISKL IR
Sbjct:   16 DTGSTQVQVALLTAKVIQLSQHLKNHNKDYASQRGLRKILGSRKQLLKYLSHKDPVSYQGLISKLGIR 83          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_PHAVU (Putative membrane protein ycf1 OS=Phaseolus vulgaris GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W   RLEDL C+NRYWFNT+NGSRFS+VR+H+YPR+KI
Sbjct: 1720 LWPKYRLEDLACINRYWFNTHNGSRFSIVRIHLYPRVKI 1758          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_CERDE (Putative membrane protein ycf1 OS=Ceratophyllum demersum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPR 110
            +W N RLEDL C+NRYWF+TNNGSRFSM+R+HMYPR
Sbjct: 1860 LWPNFRLEDLACINRYWFDTNNGSRFSMLRIHMYPR 1895          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_ACOCL (Putative membrane protein ycf1 OS=Acorus calamus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+T NGSRFSM+R+HMYPR  I
Sbjct: 1872 LWPNYRLEDLACMNRYWFDTTNGSRFSMLRIHMYPRFLI 1910          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_ACOAM (Putative membrane protein ycf1 OS=Acorus americanus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+T NGSRFSM+R+HMYPR  I
Sbjct: 1872 LWPNYRLEDLACMNRYWFDTTNGSRFSMLRIHMYPRFLI 1910          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_DICTD (30S ribosomal protein S15 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsO PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            E +SGS E Q+   T  I++LT HL++H+KDY S+ GL K++ +R++LL YL +K+  RYK+LI +L +R+
Sbjct:   19 ENDSGSPEVQIALLTERIKKLTEHLKVHKKDYHSRVGLLKMIGRRRKLLKYLQEKDFERYKKLIQELGLRK 89          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RS15_FUSNN4.449e-1247.9530S ribosomal protein S15 OS=Fusobacterium nucleat... [more]
YCF1_POPAL5.811e-1272.50Putative membrane protein ycf1 OS=Populus alba GN=... [more]
YCF1_IPOPU5.811e-1275.00Putative membrane protein ycf1 OS=Ipomoea purpurea... [more]
RS15_RUBXD5.811e-1246.4330S ribosomal protein S15 OS=Rubrobacter xylanophi... [more]
RR15_CHLAT5.811e-1254.4130S ribosomal protein S15, chloroplastic OS=Chloro... [more]
YCF1_PHAVU7.589e-1271.79Putative membrane protein ycf1 OS=Phaseolus vulgar... [more]
YCF1_CERDE7.589e-1277.78Putative membrane protein ycf1 OS=Ceratophyllum de... [more]
YCF1_ACOCL7.589e-1274.36Putative membrane protein ycf1 OS=Acorus calamus G... [more]
YCF1_ACOAM7.589e-1274.36Putative membrane protein ycf1 OS=Acorus americanu... [more]
RS15_DICTD7.589e-1246.4830S ribosomal protein S15 OS=Dictyoglomus turgidum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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