CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_BACST (30S ribosomal protein S15 OS=Bacillus stearothermophilus GN=rpsO PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.589e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS E Q+   T  I  L  HL +H+KD+ S+RGL K++ KR+RLLAYL  K+  RY+E++ KL +R
Sbjct:   19 ENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLGLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_PELHO (Putative membrane protein ycf1 OS=Pelargonium hortorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL CMNRYWF+T NGSRFSM+R+ +YPRLK R
Sbjct: 2513 LWPNYRLEDLACMNRYWFDTTNGSRFSMLRIRVYPRLKTR 2552          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_ARAHI (Putative membrane protein ycf1 OS=Arabis hirsuta GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 122
            +W N RLEDL CMNRYWFNT NG+ FSM+R+HMY R +IR
Sbjct: 1739 LWPNFRLEDLACMNRYWFNTTNGNHFSMIRIHMYARFQIR 1778          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_FINM2 (30S ribosomal protein S15 OS=Finegoldia magna (strain ATCC 29328) GN=rpsO PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.911e-12
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  512 VRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            ++  + KE ++GS E QV   T  I  LT HL+ H+ D+ S+RGL K++ KR+ LL YLS K+  RY++LI +LNIR
Sbjct:   11 IKEYQTKEGDTGSPEVQVALLTYRINYLTEHLKSHKNDHHSRRGLFKMIGKRRNLLNYLSNKDIERYRDLIKRLNIR 87          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_ILLOL (Putative membrane protein ycf1 OS=Illicium oligandrum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            IW N RLEDL CMNRYWF+TNNGS FSM R++MYPR +I
Sbjct: 1843 IWPNYRLEDLACMNRYWFDTNNGSHFSMSRIYMYPRFRI 1881          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_GEOTN (30S ribosomal protein S15 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS E Q+   T  I  L  HL +H+KD+ S+RGL K++ KR+ LLAYL  K+  RY+ELI KL +R
Sbjct:   19 ENDTGSPEVQIAILTEQINNLNEHLRVHKKDHHSRRGLLKMVGKRRNLLAYLRNKDVARYRELIEKLGLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_BUCAP (30S ribosomal protein S15 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  527 KKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            K EKN+G  + Q+   TN I  L  H   H+KD+ S+RGL K++ KR++LL YL KKN   Y +LI  LN+R
Sbjct:   17 KNEKNTGKTDVQIALLTNQINHLQLHFSQHKKDHCSRRGLLKMVSKRRKLLNYLKKKNISCYTKLIESLNLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_ACAM1 (30S ribosomal protein S15 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.294e-11
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  512 VRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            +   +  E ++GS + QV   T  I +L+ HL+ ++KD+SS+RGL K++ +R+RLL Y+ KK++  Y+ELI +L IR
Sbjct:   12 INAYQVHETDTGSADVQVAMLTERISKLSEHLKTNKKDHSSRRGLLKMIGQRKRLLTYIMKKDQAHYRELIKRLGIR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: YCF1_DRIGR (Putative membrane protein ycf1 OS=Drimys granadensis GN=ycf1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 IWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 119
            +W N RLEDL CMNRYWF+TNNGSRFSM R++MYP+ +I
Sbjct: 1818 LWPNYRLEDLACMNRYWFDTNNGSRFSMSRIYMYPQFRI 1856          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_THEM4 (30S ribosomal protein S15 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsO PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            E ++GS E QV   T  I+ LT HL+ H KDY S+RGL K++ +R+++L YL  KN   YKE+I KL +R+
Sbjct:   14 EGDTGSAEVQVALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYLRNKNPEAYKEVIQKLGLRK 84          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RS15_BACST7.589e-1247.1430S ribosomal protein S15 OS=Bacillus stearothermo... [more]
YCF1_PELHO9.911e-1272.50Putative membrane protein ycf1 OS=Pelargonium hort... [more]
YCF1_ARAHI9.911e-1270.00Putative membrane protein ycf1 OS=Arabis hirsuta G... [more]
RS15_FINM29.911e-1246.7530S ribosomal protein S15 OS=Finegoldia magna (str... [more]
YCF1_ILLOL1.294e-1174.36Putative membrane protein ycf1 OS=Illicium oligand... [more]
RS15_GEOTN1.294e-1148.5730S ribosomal protein S15 OS=Geobacillus thermoden... [more]
RS15_BUCAP1.294e-1147.2230S ribosomal protein S15 OS=Buchnera aphidicola s... [more]
RS15_ACAM11.294e-1141.5630S ribosomal protein S15 OS=Acaryochloris marina ... [more]
YCF1_DRIGR1.691e-1171.79Putative membrane protein ycf1 OS=Drimys granadens... [more]
RS15_THEM41.691e-1147.8930S ribosomal protein S15 OS=Thermosipho melanesie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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