CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_THEP1 (30S ribosomal protein S15 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            E ++GSVE Q+   T  I+ LT HL  H KD+ S+RGL K++ +R+++L YL  K    Y+ELI+KL IR+
Sbjct:   20 ENDTGSVEVQIALLTARIKHLTEHLRKHPKDFHSRRGLMKMIGRRRKMLKYLRHKKPEVYRELIAKLGIRK 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_THEMA (30S ribosomal protein S15 OS=Thermotoga maritima GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            E ++GSVE Q+   T  I+ LT HL  H KD+ S+RGL K++ +R+++L YL  K    Y+ELI+KL IR+
Sbjct:   20 ENDTGSVEVQIALLTARIKHLTEHLRKHPKDFHSRRGLMKMIGRRRKMLKYLRHKKPEVYRELIAKLGIRK 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_SYMTH (30S ribosomal protein S15 OS=Symbiobacterium thermophilum GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS E Q+   T+ I  LT HL +H+KD+ S+RGL K++ +R+ LL YL+K +  RY +LI +LNIR
Sbjct:   19 ETDTGSPEVQIALLTHRINELTEHLRVHKKDHHSRRGLLKMVGQRRALLVYLNKISPERYAKLIDRLNIR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_PETMO (30S ribosomal protein S15 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            +K++GSVE QV   +  I+ LT HL+ H KDY S+RGL  ++ KR+++L YL K   + Y+E+I+KL IR
Sbjct:   21 DKDTGSVEVQVALLSARIKHLTEHLKQHPKDYHSRRGLMMMVGKRRKMLKYLRKSKPLVYQEIINKLGIR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_OCEIH (30S ribosomal protein S15 OS=Oceanobacillus iheyensis GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS E Q+   T  I  L  HL +H+KD+ S+RGL K++ KR+ LL YL  K+  RY+ELI KL +R
Sbjct:   19 ETDTGSPEVQIAVLTEEITSLNEHLRVHKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELIKKLGLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_LACPL (30S ribosomal protein S15 OS=Lactobacillus plantarum GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  527 KKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            + E ++GSVE QV   T  I  L  HL +H+KD+ SQRGL K +  R+ LLAYL K++  RY++LI  L +R
Sbjct:   17 RHEGDTGSVEVQVAVLTEDINELNEHLRVHKKDFHSQRGLMKKIGHRRNLLAYLRKEDVNRYRDLIQSLGLR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_CYAP4 (30S ribosomal protein S15 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 32/70 (45.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  533 EKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 742
            E ++GS + QV   T  I +L++HL+ + KD+SS+RGL +++ +R+RLLAY+ K N  RY+ LI++L IR
Sbjct:   19 ETDTGSADVQVAMLTERINKLSTHLQANSKDHSSRRGLLQMIGRRKRLLAYILKHNPERYRALITRLGIR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_BORBZ (30S ribosomal protein S15 OS=Borrelia burgdorferi (strain ZS7) GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  527 KKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            K E ++GSV  Q+   T  I+ LT HL++++KD+SS+RGL K++ +R+ LL Y  KK+   Y+ LISKL +R+
Sbjct:   16 KNESDTGSVGVQIALITGRIKYLTEHLKINKKDHSSKRGLLKLVGQRRSLLRYYQKKDLEAYRMLISKLGLRK 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RS15_BORBU (30S ribosomal protein S15 OS=Borrelia burgdorferi GN=rpsO PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  527 KKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            K E ++GSV  Q+   T  I+ LT HL++++KD+SS+RGL K++ +R+ LL Y  KK+   Y+ LISKL +R+
Sbjct:   16 KNESDTGSVGVQIALITGRIKYLTEHLKINKKDHSSKRGLLKLVGQRRSLLRYYQKKDLEAYRMLISKLGLRK 88          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RS15_THEP18.390e-1146.4830S ribosomal protein S15 OS=Thermotoga petrophila... [more]
RS15_THEMA8.390e-1146.4830S ribosomal protein S15 OS=Thermotoga maritima G... [more]
RS15_SYMTH8.390e-1147.1430S ribosomal protein S15 OS=Symbiobacterium therm... [more]
RS15_PETMO8.390e-1147.1430S ribosomal protein S15 OS=Petrotoga mobilis (st... [more]
RS15_OCEIH8.390e-1147.1430S ribosomal protein S15 OS=Oceanobacillus iheyen... [more]
RS15_LACPL8.390e-1147.2230S ribosomal protein S15 OS=Lactobacillus plantar... [more]
RS15_CYAP48.390e-1145.7130S ribosomal protein S15 OS=Cyanothece sp. (strai... [more]
RS15_BORBZ8.390e-1145.2130S ribosomal protein S15 OS=Borrelia burgdorferi ... [more]
RS15_BORBU8.390e-1145.2130S ribosomal protein S15 OS=Borrelia burgdorferi ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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