CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_SACHY (30S ribosomal protein S15, chloroplastic OS=Saccharum hybrid GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 58/76 (76.32%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  518 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            V+E+K++N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KRQRLLAYL+KKNRVRYK+LIS+L+IRE
Sbjct:    2 VKEEKQENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRQRLLAYLAKKNRVRYKKLISQLDIRE 77          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_OENEH (30S ribosomal protein S15, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps15 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVK AFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_OENBI (30S ribosomal protein S15, chloroplastic OS=Oenothera biennis GN=rps15 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVK AFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_HORVU (30S ribosomal protein S15, chloroplastic OS=Hordeum vulgare GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 2
Query:  518 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LI +LNIRE
Sbjct:   14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIRE 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_BRADI (30S ribosomal protein S15, chloroplastic OS=Brachypodium distachyon GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  461 KRKG--EGFRFMVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            K+KG  + F FMVK         E+KE+  GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:    2 KKKGGRKIFGFMVK---------EEKEEKKGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_AGRST (30S ribosomal protein S15, chloroplastic OS=Agrostis stolonifera GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.091e-26
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 2
Query:  506 ISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            +   V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:   10 VGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_LOLPR (30S ribosomal protein S15, chloroplastic OS=Lolium perenne GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.425e-26
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2
Query:  518 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 745
            V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:   14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_CUSEX (30S ribosomal protein S15, plastid OS=Cuscuta exaltata GN=rps15 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.174e-26
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 751
            MVKN  I V  Q++ ++N GSVEFQ+F FT  IRRLTSHL+LH+KD+ SQ+GLRKIL KRQRLLAYLSKK+++RYK+LI KL +R++K
Sbjct:    1 MVKNLSIWVISQKENKENRGSVEFQIFNFTKKIRRLTSHLKLHKKDFLSQKGLRKILGKRQRLLAYLSKKSKIRYKDLIDKLELRDTK 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_FAGEA (30S ribosomal protein S15, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps15 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 751
            M KN+ IS      +E+  GS  FQVF FTN IRRL++HLELH+KDYSSQRGLRKIL KRQRLLAY SKKNRVRYKELI++LNIRE K
Sbjct:    1 MKKNSVIS------QEEKKGSAAFQVFGFTNKIRRLSAHLELHKKDYSSQRGLRKILGKRQRLLAYFSKKNRVRYKELINQLNIREIK 82          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_AMBTC (30S ribosomal protein S15, chloroplastic OS=Amborella trichopoda GN=rps15 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MV N+FIS      KE+  GSVEFQVF FT+ IR+LTSHLELH+KD+ SQRG+RKIL KRQR+LAYLS KN+VRYK+LI +LNIRE K R
Sbjct:    1 MVINSFIS---SISKEEKKGSVEFQVFCFTDKIRKLTSHLELHKKDFLSQRGMRKILGKRQRMLAYLSNKNKVRYKKLIGQLNIREPKTR 87          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RR15_SACHY1.091e-2676.3230S ribosomal protein S15, chloroplastic OS=Saccha... [more]
RR15_OENEH1.091e-2673.3330S ribosomal protein S15, chloroplastic OS=Oenoth... [more]
RR15_OENBI1.091e-2673.3330S ribosomal protein S15, chloroplastic OS=Oenoth... [more]
RR15_HORVU1.091e-2676.3230S ribosomal protein S15, chloroplastic OS=Hordeu... [more]
RR15_BRADI1.091e-2667.0130S ribosomal protein S15, chloroplastic OS=Brachy... [more]
RR15_AGRST1.091e-2673.7530S ribosomal protein S15, chloroplastic OS=Agrost... [more]
RR15_LOLPR1.425e-2677.6330S ribosomal protein S15, chloroplastic OS=Lolium... [more]
RR15_CUSEX3.174e-2665.9130S ribosomal protein S15, plastid OS=Cuscuta exal... [more]
RR15_FAGEA4.145e-2671.5930S ribosomal protein S15, chloroplastic OS=Fagopy... [more]
RR15_AMBTC4.145e-2668.8930S ribosomal protein S15, chloroplastic OS=Ambore... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
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