CV712342

Overview
NameCV712342
Unique NameCV712342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = -3
Query:  234 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARS 650
            A KR+ KE K + ++PP    A P  +++  W   I GP ++PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   + W+P+ +++ +L  + S +T           I  M  +D  K +  A+S
Sbjct:    6 AYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTDE------SSIGTMESTDSTKRKYAAKS 139          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = -3
Query:  336 SKRILKELKDLQKDPPTSCSAGPVA------EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 647
            +KRI KEL  +    P + S            D+   +  I GP D+PYA G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDII--KVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 44/136 (32.35%), Postives = 64/136 (47.06%), Query Frame = -3
Query:  219 PPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKY 605
            P TSC          H     + P +  Y GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  ++  +    R +  +Y
Sbjct:   53 PSTSC---------LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = -3
Query:  321 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 650
            + KR+ KE K +  +PP   SA P  E++  W   I GP  +P+  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    6 SQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = -3
Query:  309 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 650
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = -3
Query:  309 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 650
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of CV712342 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = -3
Query:  309 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 650
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +PY GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
The following BLAST results are available for this feature:
BLAST of CV712342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC6_ASHGO2.625e-1229.58Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC17_CAEEL4.477e-1237.70Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBC12_CAEEL4.477e-1232.35NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBC6_DEBHA9.974e-1231.86Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UB2J2_MOUSE4.950e-1128.21Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN4.950e-1128.21Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UB2J2_BOVIN4.950e-1128.21Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712342 ID=CV712342; Name=CV712342; organism=Citrus sinensis; type=EST; length=823bp
GACCATTTAACTACGTGTCCATCGAAGAAGCTTCAAACACAAACATTCAA
CATTAACATAAAAACGTCCCGCCCTTGCAACTCCTCCCAACACCATTCTA
AAACACCAACGTCTGCCCTCCCCAAAGCAAGTTAAAGAAAATAGATAGAC
AACACACACAACATATTTCAATAAATGCTCCTTTTTCTGCAATATCCTAA
CAACCTTCATCCCATGGCATACTTCTGTGTCCAGCTCCTGGCCGTGGATT
CATATTTGGCCTTGTCGGACTTGTACATGTGGGCAATCTCCGGTACAAGA
GGGTCGTCGGGATTTGGATCAGTAAGCAAGGAGCAGATAGAGAGCAGGAC
CTTTGAAATGGTAAGCGCTGGACTCCACTGTTCTTTAAGGATATCAAGAC
AGATGCTTCCATTGCTGTTGATGTTCGGGTGGAAGACCTTGGTCCTAAAA
GCAACCTTTGGGGGCTTGAAAGGATAATCAGGAGGAAAATGAATGGTAAC
TAAAAATACACCTCCTGCATATGGGCTATCAGAAGGGCCCATAATTGTTG
CTTGCCAGTGGAACATGTCTTCAGCCACAGGGCCAGCGCTGCAAGACGTG
GGAGGATCCTTCTGCAAATCCTTGAGTTCCTTCAAAATACGCTTTGAAGC
CATGACTCTTCAAGGGATTATTAAAATTGAAACTACAACGAACCTTAAGA
CCTGCGAAACTTGCGCGGCAGAGAACAGGATCGGAGAGCGATAGCGTCGA
GAAAGCGAAACGGTGAAGCAGATCTAGGTCGTCAAGCCGCCCCCGCCTCG
CTCCTCTATCAACCCCTTGCCCT
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