CV712336 | Citrus Genome Database

Overview


Name	CV712336
Unique Name	CV712336
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	831

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_BRACM (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_ARATH (ATP synthase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ATPA PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.050e-23
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVI ITDGQICLETELFYRGIRPAINVGLSVSRVGS   +  ++Q
Sbjct:  342 PTNVIPITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKTMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.050e-23
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.050e-23
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_WHEAT (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum GN=ATPA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.292e-23
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLET++FYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETDVFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 35.8094 bits (81), Expect = 2.292e-23
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGS TALP
Sbjct:  311 RAAKRSDQTGAGSSTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 2.292e-23
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.000e-23
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVI ITDGQIC ETELFYRGIRPAINVGLSVSRVGS   +  ++Q
Sbjct:  342 PTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKTMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 5.000e-23
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 5.000e-23
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_MARPO (ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha GN=ATPA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.998e-22
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFYRG RPAINVGLSVSRVGS   + A++Q
Sbjct:  341 PTNVISITDGQIFLETELFYRGSRPAINVGLSVSRVGSAAQLKAMKQ 387

HSP 2 Score: 35.8094 bits (81), Expect = 3.998e-22
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SDQTGAGSLTALP
Sbjct:  310 RAAKMSDQTGAGSLTALP 327

HSP 3 Score: 33.8834 bits (76), Expect = 3.998e-22
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  327 PVIETQAGDVSAYIP 341

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GLUDA (ATP synthase subunit alpha OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.962e-20
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQ+ LET+LFYRGIRPA+NVG SVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQVFLETDLFYRGIRPAVNVGGSVSRVGSAAQIKAMKQ 388

HSP 2 Score: 33.8834 bits (76), Expect = 1.962e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342

HSP 3 Score: 31.9574 bits (71), Expect = 1.962e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  311 RAAKMSDEYGAGSLTALP 328

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_MYXXD (ATP synthase subunit alpha OS=Myxococcus xanthus (strain DK 1622) GN=atpA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.295e-20
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LF+ G+RPAINVGLSVSRVGS   + A++Q
Sbjct:  331 PTNVISITDGQIFLETDLFFAGVRPAINVGLSVSRVGSAAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 3.295e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 31.9574 bits (71), Expect = 3.295e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  300 RAAKLSDEEGAGSLTALP 317

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_MYXXA (ATP synthase subunit alpha OS=Myxococcus xanthus GN=atpA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.295e-20
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LF+ G+RPAINVGLSVSRVGS   + A++Q
Sbjct:  331 PTNVISITDGQIFLETDLFFAGVRPAINVGLSVSRVGSAAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 3.295e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 31.9574 bits (71), Expect = 3.295e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  300 RAAKLSDEEGAGSLTALP 317

The following BLAST results are available for this feature:

BLAST of CV712336 vs. ExPASy Swiss-Prot

BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPAM_BRACM	1.010e-24	85.11	ATP synthase subunit alpha, mitochondrial OS=Brass...	[more]
ATPAM_BETVU	1.010e-24	85.11	ATP synthase subunit alpha, mitochondrial OS=Beta ...	[more]
ATPAM_ARATH	1.010e-24	85.11	ATP synthase subunit alpha, mitochondrial OS=Arabi...	[more]
ATPAM_NICPL	1.050e-23	80.85	ATP synthase subunit alpha, mitochondrial OS=Nicot...	[more]
ATPAM_WHEAT	2.292e-23	80.85	ATP synthase subunit alpha, mitochondrial OS=Triti...	[more]
ATPAM_HELAN	5.000e-23	78.72	ATP synthase subunit alpha, mitochondrial OS=Helia...	[more]
ATPAM_MARPO	3.998e-22	80.85	ATP synthase subunit alpha, mitochondrial OS=March...	[more]
ATPA_GLUDA	1.962e-20	74.47	ATP synthase subunit alpha OS=Gluconacetobacter di...	[more]
ATPA_MYXXD	3.295e-20	74.47	ATP synthase subunit alpha OS=Myxococcus xanthus (...	[more]
ATPA_MYXXA	3.295e-20	74.47	ATP synthase subunit alpha OS=Myxococcus xanthus G...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT