CV712336 | Citrus Genome Database

Overview


Name	CV712336
Unique Name	CV712336
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	831

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GRABC (ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.296e-20
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELF++GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLETELFFKGIRPAVNVGLSVSRVGSSAQIKAMKQ 386

HSP 2 Score: 33.8834 bits (76), Expect = 3.296e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  326 PVIETQAGDVSAYIP 340

HSP 3 Score: 29.6462 bits (65), Expect = 3.296e-20
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  309 RAAKMNDAHGAGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_MAGSA (ATP synthase subunit alpha OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.296e-20
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETELFYKGIRPAVNVGLSVSRVGSAAQIKAMKQ 385

HSP 2 Score: 31.5722 bits (70), Expect = 3.296e-20
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  325 PVIETQANDVSAYIP 339

HSP 3 Score: 30.0314 bits (66), Expect = 3.296e-20
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D  GAGSLTALP
Sbjct:  308 RAAKMGDAAGAGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ZYMMO (ATP synthase subunit alpha OS=Zymomonas mobilis GN=atpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.296e-20
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPAINVGLSVSRVGS     A+++
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAINVGLSVSRVGSAAQTKAMKK 385

HSP 2 Score: 33.4982 bits (75), Expect = 3.296e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 31.9574 bits (71), Expect = 3.296e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  308 RAAKMSDKMGAGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RAT (ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-20
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  382 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 428

HSP 2 Score: 33.8834 bits (76), Expect = 4.259e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  368 PVIETQAGDVSAYIP 382

HSP 3 Score: 28.4906 bits (62), Expect = 4.259e-20
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  351 RAAKMNDSFGGGSLTALP 368

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_MOUSE (ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.259e-20
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  382 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 428

HSP 2 Score: 33.8834 bits (76), Expect = 4.259e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  368 PVIETQAGDVSAYIP 382

HSP 3 Score: 28.4906 bits (62), Expect = 4.259e-20
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  351 RAAKMNDSFGGGSLTALP 368

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_KLULA (ATP synthase subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=ATP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.261e-20
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE ELFY+GIRPAINVGLSVSRVGS   V AL+Q
Sbjct:  379 PTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQ 425

HSP 2 Score: 32.3426 bits (72), Expect = 4.261e-20
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ GDVSAYIP
Sbjct:  365 PVIETQGGDVSAYIP 379

HSP 3 Score: 29.261 bits (64), Expect = 4.261e-20
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S++ G GSLTALP
Sbjct:  348 RAAKMSEKNGGGSLTALP 365

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_XENLA (ATP synthase subunit alpha, mitochondrial OS=Xenopus laevis GN=atp5a PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.261e-20
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  374 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 420

HSP 2 Score: 33.8834 bits (76), Expect = 4.261e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  360 PVIETQAGDVSAYIP 374

HSP 3 Score: 28.4906 bits (62), Expect = 4.261e-20
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  343 RAAKMNDHFGGGSLTALP 360

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICCK (ATP synthase subunit alpha OS=Rickettsia canadensis (strain McKiel) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.271e-20
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ELFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESELFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 4.271e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 30.0314 bits (66), Expect = 4.271e-20
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD  G+GSLTALP
Sbjct:  308 RAAKMSDAKGSGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ACICJ (ATP synthase subunit alpha OS=Acidiphilium cryptum (strain JF-5) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.272e-20
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELF++GIRPA+NVG SVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLETELFFKGIRPAVNVGNSVSRVGSAAQIKAMKQ 386

HSP 2 Score: 33.4982 bits (75), Expect = 4.272e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGD+SAYIP
Sbjct:  326 PVIETQAGDISAYIP 340

HSP 3 Score: 31.9574 bits (71), Expect = 4.272e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  309 RAAKMSDEFGAGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_PONAB (ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.519e-20
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+GIRPAINVGLSVSRVGS     A++Q
Sbjct:  382 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 428

HSP 2 Score: 33.8834 bits (76), Expect = 5.519e-20
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  368 PVIETQAGDVSAYIP 382

HSP 3 Score: 28.1054 bits (61), Expect = 5.519e-20
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  351 RAAKMNDAFGGGSLTALP 368

The following BLAST results are available for this feature:

BLAST of CV712336 vs. ExPASy Swiss-Prot

BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPA_GRABC	3.296e-20	76.60	ATP synthase subunit alpha OS=Granulibacter bethes...	[more]
ATPA_MAGSA	3.296e-20	78.72	ATP synthase subunit alpha OS=Magnetospirillum mag...	[more]
ATPA_ZYMMO	3.296e-20	76.60	ATP synthase subunit alpha OS=Zymomonas mobilis GN...	[more]
ATPA_RAT	4.259e-20	80.85	ATP synthase subunit alpha, mitochondrial OS=Rattu...	[more]
ATPA_MOUSE	4.259e-20	80.85	ATP synthase subunit alpha, mitochondrial OS=Mus m...	[more]
ATPA_KLULA	4.261e-20	82.98	ATP synthase subunit alpha, mitochondrial OS=Kluyv...	[more]
ATPA_XENLA	4.261e-20	80.85	ATP synthase subunit alpha, mitochondrial OS=Xenop...	[more]
ATPA_RICCK	4.271e-20	74.47	ATP synthase subunit alpha OS=Rickettsia canadensi...	[more]
ATPA_ACICJ	4.272e-20	74.47	ATP synthase subunit alpha OS=Acidiphilium cryptum...	[more]
ATPA_PONAB	5.519e-20	80.85	ATP synthase subunit alpha, mitochondrial OS=Pongo...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT