CV712336 | Citrus Genome Database

Overview


Name	CV712336
Unique Name	CV712336
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	831

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_NEOSM (ATP synthase subunit alpha OS=Neorickettsia sennetsu (strain Miyayama) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.298e-20
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELF +G++PA+NVGLSVSRVGS   + A++Q
Sbjct:  341 PTNVISITDGQIFLETELFNKGVKPAVNVGLSVSRVGSAAQIKAIKQ 387

HSP 2 Score: 33.4982 bits (75), Expect = 9.298e-20
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  327 PIIETQAGDVSAYIP 341

HSP 3 Score: 31.5722 bits (70), Expect = 9.298e-20
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  310 RAAKMSDKHGAGSLTALP 327

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CAEEL (ATP synthase subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=H28O16.1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.202e-19
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LETELFY+G+RPAINVGLSVSRVGS     A++Q
Sbjct:  367 PTNVISITDGQIFLETELFYKGVRPAINVGLSVSRVGSAAQTKAMKQ 413

HSP 2 Score: 33.8834 bits (76), Expect = 1.202e-19
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  353 PVIETQAGDVSAYIP 367

HSP 3 Score: 26.9498 bits (58), Expect = 1.202e-19
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK ++  G GSLTALP
Sbjct:  336 RAAKMNNSLGGGSLTALP 353

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOSL (ATP synthase subunit alpha OS=Geobacter sulfurreducens GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.205e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3

Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  332 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 383

HSP 2 Score: 33.4982 bits (75), Expect = 1.205e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  318 PIIETQAGDVSAYIP 332

HSP 3 Score: 31.187 bits (69), Expect = 1.205e-19
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD  GAGSLTALP
Sbjct:  301 RAAKLSDDCGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOMG (ATP synthase subunit alpha OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.205e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3

Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  332 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 383

HSP 2 Score: 33.4982 bits (75), Expect = 1.205e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  318 PIIETQAGDVSAYIP 332

HSP 3 Score: 31.187 bits (69), Expect = 1.205e-19
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD  GAGSLTALP
Sbjct:  301 RAAKLSDDCGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICAH (ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.561e-19
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ELFY+G+RPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESELFYKGVRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 28.4906 bits (62), Expect = 1.561e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S++ G GSLTALP
Sbjct:  308 RAAKMSEEKGNGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICTY (ATP synthase subunit alpha OS=Rickettsia typhi GN=atpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.561e-19
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE++LFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESDLFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 29.261 bits (64), Expect = 1.561e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S++ G GSLTALP
Sbjct:  308 RAAKMSEEKGGGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICPU (ATP synthase subunit alpha OS=Rickettsia peacockii (strain Rustic) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.561e-19
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ELFY+G+RPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESELFYKGVRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 28.4906 bits (62), Expect = 1.561e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S+  G+GSLTALP
Sbjct:  308 RAAKMSEAKGSGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICM5 (ATP synthase subunit alpha OS=Rickettsia massiliae (strain Mtu5) GN=atpA PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.561e-19
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ELFY+G+RPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESELFYKGVRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 28.4906 bits (62), Expect = 1.561e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S+  G+GSLTALP
Sbjct:  308 RAAKMSEAKGSGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_AZOC5 (ATP synthase subunit alpha OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.561e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE++LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLESDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 386

HSP 2 Score: 31.5722 bits (70), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  326 PVIETQANDVSAYIP 340

HSP 3 Score: 31.187 bits (69), Expect = 1.561e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  309 RAAKLNDENGAGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_NOVAD (ATP synthase subunit alpha OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.561e-19
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPAINVGLSVSRVGS     A+++
Sbjct:  339 PTNVISITDGQIFLETGLFYQGIRPAINVGLSVSRVGSSAQTKAMKK 385

HSP 2 Score: 33.4982 bits (75), Expect = 1.561e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 31.5722 bits (70), Expect = 1.561e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKMNDENGAGSLTALP 325

The following BLAST results are available for this feature:

BLAST of CV712336 vs. ExPASy Swiss-Prot

BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPA_NEOSM	9.298e-20	72.34	ATP synthase subunit alpha OS=Neorickettsia sennet...	[more]
ATPA_CAEEL	1.202e-19	78.72	ATP synthase subunit alpha, mitochondrial OS=Caeno...	[more]
ATPA_GEOSL	1.205e-19	69.23	ATP synthase subunit alpha OS=Geobacter sulfurredu...	[more]
ATPA_GEOMG	1.205e-19	69.23	ATP synthase subunit alpha OS=Geobacter metallired...	[more]
ATPA_RICAH	1.561e-19	72.34	ATP synthase subunit alpha OS=Rickettsia akari (st...	[more]
ATPA_RICTY	1.561e-19	72.34	ATP synthase subunit alpha OS=Rickettsia typhi GN=...	[more]
ATPA_RICPU	1.561e-19	72.34	ATP synthase subunit alpha OS=Rickettsia peacockii...	[more]
ATPA_RICM5	1.561e-19	72.34	ATP synthase subunit alpha OS=Rickettsia massiliae...	[more]
ATPA_AZOC5	1.561e-19	74.47	ATP synthase subunit alpha OS=Azorhizobium caulino...	[more]
ATPA_NOVAD	1.561e-19	76.60	ATP synthase subunit alpha OS=Novosphingobium arom...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT