CV712336

Overview
NameCV712336
Unique NameCV712336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CLOBK (ATP synthase subunit alpha OS=Clostridium botulinum (strain Okra / Type B1) GN=atpA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.350e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE+ELF  G RPA+N G+SVSRVG    + A++Q   T+
Sbjct:  331 PTNVISITDGQIFLESELFNAGQRPAVNAGISVSRVGGNAQIKAMKQVAGTL 382

HSP 2 Score: 29.261 bits (64), Expect = 1.350e-14
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ET AGDV+AYIP
Sbjct:  317 PIVETLAGDVTAYIP 331

HSP 3 Score: 26.1794 bits (56), Expect = 1.350e-14
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+A+ S++ G GSLTALP
Sbjct:  300 RSARLSEKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CLOBJ (ATP synthase subunit alpha OS=Clostridium botulinum (strain Kyoto / Type A2) GN=atpA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.350e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE+ELF  G RPA+N G+SVSRVG    + A++Q   T+
Sbjct:  331 PTNVISITDGQIFLESELFNAGQRPAVNAGISVSRVGGNAQIKAMKQVAGTL 382

HSP 2 Score: 29.261 bits (64), Expect = 1.350e-14
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ET AGDV+AYIP
Sbjct:  317 PIVETLAGDVTAYIP 331

HSP 3 Score: 26.1794 bits (56), Expect = 1.350e-14
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+A+ S++ G GSLTALP
Sbjct:  300 RSARLSEKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CLOBH (ATP synthase subunit alpha OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.350e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE+ELF  G RPA+N G+SVSRVG    + A++Q   T+
Sbjct:  331 PTNVISITDGQIFLESELFNAGQRPAVNAGISVSRVGGNAQIKAMKQVAGTL 382

HSP 2 Score: 29.261 bits (64), Expect = 1.350e-14
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ET AGDV+AYIP
Sbjct:  317 PIVETLAGDVTAYIP 331

HSP 3 Score: 26.1794 bits (56), Expect = 1.350e-14
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+A+ S++ G GSLTALP
Sbjct:  300 RSARLSEKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CLOB6 (ATP synthase subunit alpha OS=Clostridium botulinum (strain 657 / Type Ba4) GN=atpA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.350e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE+ELF  G RPA+N G+SVSRVG    + A++Q   T+
Sbjct:  331 PTNVISITDGQIFLESELFNAGQRPAVNAGISVSRVGGNAQIKAMKQVAGTL 382

HSP 2 Score: 29.261 bits (64), Expect = 1.350e-14
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ET AGDV+AYIP
Sbjct:  317 PIVETLAGDVTAYIP 331

HSP 3 Score: 26.1794 bits (56), Expect = 1.350e-14
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+A+ S++ G GSLTALP
Sbjct:  300 RSARLSEKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CLOB1 (ATP synthase subunit alpha OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.350e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE+ELF  G RPA+N G+SVSRVG    + A++Q   T+
Sbjct:  331 PTNVISITDGQIFLESELFNAGQRPAVNAGISVSRVGGNAQIKAMKQVAGTL 382

HSP 2 Score: 29.261 bits (64), Expect = 1.350e-14
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ET AGDV+AYIP
Sbjct:  317 PIVETLAGDVTAYIP 331

HSP 3 Score: 26.1794 bits (56), Expect = 1.350e-14
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+A+ S++ G GSLTALP
Sbjct:  300 RSARLSEKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_SOLUE (ATP synthase subunit alpha OS=Solibacter usitatus (strain Ellin6076) GN=atpA PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.745e-14
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = -3 
Query:  599 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQ 736
            PTNVISITDGQI LE +LF    RPAINVG+SVSRVG      A++
Sbjct:  332 PTNVISITDGQIFLEADLFNSNQRPAINVGISVSRVGGNAQTKAMK 377

HSP 2 Score: 31.9574 bits (71), Expect = 1.745e-14
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P IETQAGDVSAYIP
Sbjct:  318 PFIETQAGDVSAYIP 332

HSP 3 Score: 28.4906 bits (62), Expect = 1.745e-14
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +++ GAGSLTALP
Sbjct:  301 RAAKLNNEHGAGSLTALP 318
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_LACRJ (ATP synthase subunit alpha OS=Lactobacillus reuteri (strain JCM 1112) GN=atpA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.745e-14
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  542 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTITPLPLGSPNQWES 736
            PTNVISITDGQI L+++ FY G RPAI+ G SVSRVG    + A+++   T+  L + S N+  S
Sbjct:  331 PTNVISITDGQIFLDSDEFYAGQRPAIDAGTSVSRVGGDAQIKAMKKVAGTLR-LDIASYNELAS 394

HSP 2 Score: 32.3426 bits (72), Expect = 1.745e-14
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+I+TQAGDVSAYIP
Sbjct:  317 PIIQTQAGDVSAYIP 331

HSP 3 Score: 27.7202 bits (60), Expect = 1.745e-14
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAA+ SD  G GS+TALP
Sbjct:  300 RAARLSDDLGGGSMTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_LACRD (ATP synthase subunit alpha OS=Lactobacillus reuteri (strain DSM 20016) GN=atpA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.745e-14
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  542 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTITPLPLGSPNQWES 736
            PTNVISITDGQI L+++ FY G RPAI+ G SVSRVG    + A+++   T+  L + S N+  S
Sbjct:  331 PTNVISITDGQIFLDSDEFYAGQRPAIDAGTSVSRVGGDAQIKAMKKVAGTLR-LDIASYNELAS 394

HSP 2 Score: 32.3426 bits (72), Expect = 1.745e-14
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+I+TQAGDVSAYIP
Sbjct:  317 PIIQTQAGDVSAYIP 331

HSP 3 Score: 27.7202 bits (60), Expect = 1.745e-14
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAA+ SD  G GS+TALP
Sbjct:  300 RAARLSDDLGGGSMTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_LACAC (ATP synthase subunit alpha OS=Lactobacillus acidophilus GN=atpA PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.746e-14
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI L+++LF+ G RPAI+ G SVSRVG    + A+++   T+
Sbjct:  331 PTNVISITDGQIFLQSDLFFAGTRPAIDAGNSVSRVGGNAQIKAMKKVAGTL 382

HSP 2 Score: 30.8018 bits (68), Expect = 1.746e-14
Identity = 11/15 (73.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+I+T+AGD+SAYIP
Sbjct:  317 PIIQTEAGDISAYIP 331

HSP 3 Score: 28.8758 bits (63), Expect = 1.746e-14
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            R+AK SD+ G GSLTALP
Sbjct:  300 RSAKLSDKLGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BACV8 (ATP synthase subunit alpha OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=atpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.862e-14
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LET+LF +G RPAINVG+SVSRVG    + ++++   T+
Sbjct:  357 PTNVISITDGQIFLETDLFNQGFRPAINVGISVSRVGGSAQIKSMKKVAGTL 408

HSP 2 Score: 33.4982 bits (75), Expect = 1.862e-14
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  343 PIIETQAGDVSAYIP 357
The following BLAST results are available for this feature:
BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CLOBK1.350e-1461.54ATP synthase subunit alpha OS=Clostridium botulinu... [more]
ATPA_CLOBJ1.350e-1461.54ATP synthase subunit alpha OS=Clostridium botulinu... [more]
ATPA_CLOBH1.350e-1461.54ATP synthase subunit alpha OS=Clostridium botulinu... [more]
ATPA_CLOB61.350e-1461.54ATP synthase subunit alpha OS=Clostridium botulinu... [more]
ATPA_CLOB11.350e-1461.54ATP synthase subunit alpha OS=Clostridium botulinu... [more]
ATPA_SOLUE1.745e-1465.22ATP synthase subunit alpha OS=Solibacter usitatus ... [more]
ATPA_LACRJ1.745e-1450.77ATP synthase subunit alpha OS=Lactobacillus reuter... [more]
ATPA_LACRD1.745e-1450.77ATP synthase subunit alpha OS=Lactobacillus reuter... [more]
ATPA_LACAC1.746e-1455.77ATP synthase subunit alpha OS=Lactobacillus acidop... [more]
ATPA_BACV81.862e-1461.54ATP synthase subunit alpha OS=Bacteroides vulgatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT
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