CV712336 | Citrus Genome Database

Overview


Name	CV712336
Unique Name	CV712336
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	831

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_AGRVS (ATP synthase subunit alpha OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.023e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  338 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSAAQIKAMKQ 384

HSP 2 Score: 31.9574 bits (71), Expect = 2.023e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  307 RAAKLSDERGAGSLTALP 324

HSP 3 Score: 28.4906 bits (62), Expect = 2.023e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  324 PVIETQGNDVSAFIP 338

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_AGRT5 (ATP synthase subunit alpha OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.023e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSAAQIKAMKQ 385

HSP 2 Score: 31.9574 bits (71), Expect = 2.023e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  308 RAAKLSDEMGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 2.023e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHORU (ATP synthase subunit alpha OS=Rhodospirillum rubrum GN=atpA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.023e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LF++GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLETDLFFKGIRPAVNVGLSVSRVGSSAQIKAMKQ 386

HSP 2 Score: 31.5722 bits (70), Expect = 2.023e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  326 PVIETQANDVSAYIP 340

HSP 3 Score: 30.4166 bits (67), Expect = 2.023e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  309 RAAKLNDDNGAGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHORT (ATP synthase subunit alpha OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.023e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LF++GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLETDLFFKGIRPAVNVGLSVSRVGSSAQIKAMKQ 386

HSP 2 Score: 31.5722 bits (70), Expect = 2.023e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  326 PVIETQANDVSAYIP 340

HSP 3 Score: 30.4166 bits (67), Expect = 2.023e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  309 RAAKLNDDNGAGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_SCHPO (ATP synthase subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=atp1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.616e-19
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = -3

Query:  410 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ-----KIFTITPLPLGSPNQWESTNDIFKRKNPIKILMWGFIF----FILISFQSTIPLAFC--DGQIDSPPI 736
            PTNVISITDGQI LE+ELF++GIRPAINVGLSVSRVGS   V A++Q     K+F      + S  Q+ S  D   R    + L    +     +  ++ +  +PL +C   G +D  P+
Sbjct:  367 PTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPV 486

HSP 2 Score: 32.3426 bits (72), Expect = 2.616e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ GDVSAYIP
Sbjct:  353 PVIETQGGDVSAYIP 367

HSP 3 Score: 27.335 bits (59), Expect = 2.616e-19
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S + G GSLTALP
Sbjct:  336 RAAKMSPKHGGGSLTALP 353

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICB8 (ATP synthase subunit alpha OS=Rickettsia bellii (strain OSU 85-389) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ELFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESELFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 2.621e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 27.335 bits (59), Expect = 2.621e-19
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = -1

Query:  778 AAKRSDQTGAGSLTALP 828
            AAK S++ G GSLTALP
Sbjct:  309 AAKMSEEKGGGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHIME (ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.9574 bits (71), Expect = 2.621e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  308 RAAKLSDERGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 2.621e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ANASK (ATP synthase subunit alpha OS=Anaeromyxobacter sp. (strain K) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.621e-19
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ LFY+G+RPAINVG+SVSRVG    + A++Q
Sbjct:  331 PTNVISITDGQIFLESNLFYQGVRPAINVGISVSRVGGSAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 2.621e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 31.5722 bits (70), Expect = 2.621e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  300 RAAKLSDKEGAGSLTALP 317

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ANAD2 (ATP synthase subunit alpha OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.621e-19
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ LFY+G+RPAINVG+SVSRVG    + A++Q
Sbjct:  331 PTNVISITDGQIFLESNLFYQGVRPAINVGISVSRVGGSAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 2.621e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 31.5722 bits (70), Expect = 2.621e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  300 RAAKLSDKEGAGSLTALP 317

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_EHRCJ (ATP synthase subunit alpha OS=Ehrlichia canis (strain Jake) GN=atpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-19
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+E+FY+G RPA+NVGLSVSRVGS   + ++++
Sbjct:  341 PTNVISITDGQIFLESEIFYKGFRPAVNVGLSVSRVGSAAQIKSVKK 387

HSP 2 Score: 33.113 bits (74), Expect = 2.621e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAY+P
Sbjct:  327 PIIETQAGDVSAYVP 341

HSP 3 Score: 32.3426 bits (72), Expect = 2.621e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  310 RAAKMSDEKGAGSLTALP 327

The following BLAST results are available for this feature:

BLAST of CV712336 vs. ExPASy Swiss-Prot

BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPA_AGRVS	2.023e-19	76.60	ATP synthase subunit alpha OS=Agrobacterium vitis ...	[more]
ATPA_AGRT5	2.023e-19	76.60	ATP synthase subunit alpha OS=Agrobacterium tumefa...	[more]
ATPA_RHORU	2.023e-19	74.47	ATP synthase subunit alpha OS=Rhodospirillum rubru...	[more]
ATPA_RHORT	2.023e-19	74.47	ATP synthase subunit alpha OS=Rhodospirillum rubru...	[more]
ATPA_SCHPO	2.616e-19	42.50	ATP synthase subunit alpha, mitochondrial OS=Schiz...	[more]
ATPA_RICB8	2.621e-19	74.47	ATP synthase subunit alpha OS=Rickettsia bellii (s...	[more]
ATPA_RHIME	2.621e-19	76.60	ATP synthase subunit alpha OS=Rhizobium meliloti G...	[more]
ATPA_ANASK	2.621e-19	70.21	ATP synthase subunit alpha OS=Anaeromyxobacter sp....	[more]
ATPA_ANAD2	2.621e-19	70.21	ATP synthase subunit alpha OS=Anaeromyxobacter deh...	[more]
ATPA_EHRCJ	2.621e-19	68.09	ATP synthase subunit alpha OS=Ehrlichia canis (str...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT