CV712336 | Citrus Genome Database

Overview


Name	CV712336
Unique Name	CV712336
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	831

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA1_GLUOX (ATP synthase subunit alpha 1 OS=Gluconobacter oxydans GN=atpA1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.396e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFYRGIRPA+NVG SVSRVGS   + A++Q
Sbjct:  340 PTNVISITDGQIFLETDLFYRGIRPAVNVGGSVSRVGSAAQIKAMKQ 386

HSP 2 Score: 31.187 bits (69), Expect = 3.396e-19
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGD +AYIP
Sbjct:  326 PVIETQAGDTAAYIP 340

HSP 3 Score: 30.0314 bits (66), Expect = 3.396e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD  G GSLTALP
Sbjct:  309 RAAKMSDANGGGSLTALP 326

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RICPR (ATP synthase subunit alpha OS=Rickettsia prowazekii GN=atpA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.396e-19
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE++LFY+GIRPA+NVG+SVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESDLFYKGIRPAVNVGISVSRVGSAAQIKAMKQ 385

HSP 2 Score: 33.4982 bits (75), Expect = 3.396e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 28.1054 bits (61), Expect = 3.396e-19
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK S + G GSLTALP
Sbjct:  308 RAAKMSKEKGGGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_XANP2 (ATP synthase subunit alpha OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.396e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE++LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLESDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.5722 bits (70), Expect = 3.396e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  325 PVIETQANDVSAYIP 339

HSP 3 Score: 30.0314 bits (66), Expect = 3.396e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKLNDSLGAGSLTALP 325

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_SULDN (ATP synthase subunit alpha OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=atpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.397e-19
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = -3

Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LETELF  G+RPAINVGLSVSRVG    + A +Q   T+
Sbjct:  333 PTNVISITDGQIFLETELFNSGVRPAINVGLSVSRVGGAAQIKATKQVAGTL 384

HSP 2 Score: 33.4982 bits (75), Expect = 3.397e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  319 PIIETQAGDVSAYIP 333

HSP 3 Score: 31.5722 bits (70), Expect = 3.397e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  302 RAAKVSDERGAGSLTALP 319

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELPY (ATP synthase subunit alpha OS=Helicobacter pylori GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELPS (ATP synthase subunit alpha OS=Helicobacter pylori (strain Shi470) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELPJ (ATP synthase subunit alpha OS=Helicobacter pylori J99 GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELPH (ATP synthase subunit alpha OS=Helicobacter pylori (strain HPAG1) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELPG (ATP synthase subunit alpha OS=Helicobacter pylori (strain G27) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

[Close]

BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELP2 (ATP synthase subunit alpha OS=Helicobacter pylori (strain P12) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3

Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 3.398e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2

Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 30.0314 bits (66), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1

Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKLCDEKGAGSLTALP 318

The following BLAST results are available for this feature:

BLAST of CV712336 vs. ExPASy Swiss-Prot

BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPA1_GLUOX	3.396e-19	76.60	ATP synthase subunit alpha 1 OS=Gluconobacter oxyd...	[more]
ATPA_RICPR	3.396e-19	72.34	ATP synthase subunit alpha OS=Rickettsia prowazeki...	[more]
ATPA_XANP2	3.396e-19	74.47	ATP synthase subunit alpha OS=Xanthobacter autotro...	[more]
ATPA_SULDN	3.397e-19	69.23	ATP synthase subunit alpha OS=Sulfurimonas denitri...	[more]
ATPA_HELPY	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]
ATPA_HELPS	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]
ATPA_HELPJ	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]
ATPA_HELPH	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]
ATPA_HELPG	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]
ATPA_HELP2	3.398e-19	74.47	ATP synthase subunit alpha OS=Helicobacter pylori ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT