CV712336

Overview
NameCV712336
Unique NameCV712336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOSM (ATP synthase subunit alpha OS=Geobacter sp. (strain M21) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  331 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382

HSP 2 Score: 33.8834 bits (76), Expect = 3.398e-19
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  317 PVIETQAGDVSAYIP 331

HSP 3 Score: 29.261 bits (64), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RA K SD  GAGSLTALP
Sbjct:  300 RACKVSDDCGAGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOBB (ATP synthase subunit alpha OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.398e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  331 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382

HSP 2 Score: 33.8834 bits (76), Expect = 3.398e-19
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  317 PVIETQAGDVSAYIP 331

HSP 3 Score: 29.261 bits (64), Expect = 3.398e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RA K SD  GAGSLTALP
Sbjct:  300 RACKVSDDCGAGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_PARL1 (ATP synthase subunit alpha OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.400e-19
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 4.400e-19
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQA DVSAYIP
Sbjct:  325 PIIETQANDVSAYIP 339

HSP 3 Score: 28.8758 bits (63), Expect = 4.400e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ G GSLTALP
Sbjct:  308 RAAKLNDENGNGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_HELAH (ATP synthase subunit alpha OS=Helicobacter acinonychis (strain Sheeba) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.402e-19
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTN+ISITDGQI LET+LFY GIRPAINVGLSVSRVG    + A +Q
Sbjct:  332 PTNIISITDGQIFLETDLFYSGIRPAINVGLSVSRVGGAAQIKATKQ 378

HSP 2 Score: 33.113 bits (74), Expect = 4.402e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P++ETQAGDVSAYIP
Sbjct:  318 PIVETQAGDVSAYIP 332

HSP 3 Score: 29.6462 bits (65), Expect = 4.402e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D+ GAGSLTALP
Sbjct:  301 RAAKVCDEKGAGSLTALP 318
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_CARHZ (ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.403e-19
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE++LFY G+RPA+NVGLSVSRVG    + A++Q
Sbjct:  331 PTNVISITDGQIYLESDLFYAGVRPAVNVGLSVSRVGGAAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 4.403e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 30.0314 bits (66), Expect = 4.403e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ G GSLTALP
Sbjct:  300 RAAKLSDEYGGGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHIL3 (ATP synthase subunit alpha OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.701e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSAAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 5.701e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKMNDDMGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 5.701e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_OCHA4 (ATP synthase subunit alpha OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.701e-19
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   V A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQVKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 5.701e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 5.701e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_MESSB (ATP synthase subunit alpha OS=Mesorhizobium sp. (strain BNC1) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.701e-19
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LF++G+RPA+NVGLSVSRVGS   V A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFFQGVRPAVNVGLSVSRVGSAAQVKAMKQ 385

HSP 2 Score: 31.5722 bits (70), Expect = 5.701e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  325 PVIETQANDVSAYIP 339

HSP 3 Score: 29.6462 bits (65), Expect = 5.701e-19
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G+GSLTALP
Sbjct:  308 RAAKMNDDNGSGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOUR (ATP synthase subunit alpha OS=Geobacter uraniireducens (strain Rf4) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.704e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  331 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382

HSP 2 Score: 33.4982 bits (75), Expect = 5.704e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 28.8758 bits (63), Expect = 5.704e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RA K SD  GAGSLTALP
Sbjct:  300 RACKVSDACGAGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_GEOSF (ATP synthase subunit alpha OS=Geobacter sp. (strain FRC-32) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.704e-19
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -3 
Query:  581 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQKIFTI 736
            PTNVISITDGQI LE++LFY G+RPAINVGLSVSRVG    V A++Q   T+
Sbjct:  331 PTNVISITDGQIYLESDLFYSGVRPAINVGLSVSRVGGSAQVKAMKQVAGTL 382

HSP 2 Score: 33.4982 bits (75), Expect = 5.704e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 28.8758 bits (63), Expect = 5.704e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RA K SD  GAGSLTALP
Sbjct:  300 RACKVSDACGAGSLTALP 317
The following BLAST results are available for this feature:
BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_GEOSM3.398e-1969.23ATP synthase subunit alpha OS=Geobacter sp. (strai... [more]
ATPA_GEOBB3.398e-1969.23ATP synthase subunit alpha OS=Geobacter bemidjiens... [more]
ATPA_PARL14.400e-1974.47ATP synthase subunit alpha OS=Parvibaculum lavamen... [more]
ATPA_HELAH4.402e-1974.47ATP synthase subunit alpha OS=Helicobacter acinony... [more]
ATPA_CARHZ4.403e-1970.21ATP synthase subunit alpha OS=Carboxydothermus hyd... [more]
ATPA_RHIL35.701e-1976.60ATP synthase subunit alpha OS=Rhizobium leguminosa... [more]
ATPA_OCHA45.701e-1978.72ATP synthase subunit alpha OS=Ochrobactrum anthrop... [more]
ATPA_MESSB5.701e-1974.47ATP synthase subunit alpha OS=Mesorhizobium sp. (s... [more]
ATPA_GEOUR5.704e-1969.23ATP synthase subunit alpha OS=Geobacter uraniiredu... [more]
ATPA_GEOSF5.704e-1969.23ATP synthase subunit alpha OS=Geobacter sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT
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