CV712336

Overview
NameCV712336
Unique NameCV712336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_SINMW (ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKLNDDNGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHISN (ATP synthase subunit alpha OS=Rhizobium sp. (strain NGR234) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKLNDDNGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHILW (ATP synthase subunit alpha OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKMNDDKGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHIEC (ATP synthase subunit alpha OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKMNDDKGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_RHIE6 (ATP synthase subunit alpha OS=Rhizobium etli (strain CIAT 652) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETDLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 30.4166 bits (67), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  GAGSLTALP
Sbjct:  308 RAAKMNDDKGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSU (ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUSI (ATP synthase subunit alpha OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUO2 (ATP synthase subunit alpha OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUME (ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUMB (ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
The following BLAST results are available for this feature:
BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_SINMW7.386e-1976.60ATP synthase subunit alpha OS=Sinorhizobium medica... [more]
ATPA_RHISN7.386e-1976.60ATP synthase subunit alpha OS=Rhizobium sp. (strai... [more]
ATPA_RHILW7.386e-1976.60ATP synthase subunit alpha OS=Rhizobium leguminosa... [more]
ATPA_RHIEC7.386e-1976.60ATP synthase subunit alpha OS=Rhizobium etli (stra... [more]
ATPA_RHIE67.386e-1976.60ATP synthase subunit alpha OS=Rhizobium etli (stra... [more]
ATPA_BRUSU7.386e-1976.60ATP synthase subunit alpha OS=Brucella suis GN=atp... [more]
ATPA_BRUSI7.386e-1976.60ATP synthase subunit alpha OS=Brucella suis (strai... [more]
ATPA_BRUO27.386e-1976.60ATP synthase subunit alpha OS=Brucella ovis (strai... [more]
ATPA_BRUME7.386e-1976.60ATP synthase subunit alpha OS=Brucella melitensis ... [more]
ATPA_BRUMB7.386e-1976.60ATP synthase subunit alpha OS=Brucella melitensis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT
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