CV712336

Overview
NameCV712336
Unique NameCV712336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUC2 (ATP synthase subunit alpha OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUAB (ATP synthase subunit alpha OS=Brucella abortus GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA2 (ATP synthase subunit alpha OS=Brucella abortus (strain 2308) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_BRUA1 (ATP synthase subunit alpha OS=Brucella abortus (strain S19) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.386e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET LFY+GIRPA+NVGLSVSRVGS   + A++Q
Sbjct:  339 PTNVISITDGQIFLETNLFYQGIRPAVNVGLSVSRVGSSAQIKAMKQ 385

HSP 2 Score: 31.187 bits (69), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D+ GAGSLTALP
Sbjct:  308 RAAKLNDENGAGSLTALP 325

HSP 3 Score: 28.4906 bits (62), Expect = 7.386e-19
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQ  DVSA+IP
Sbjct:  325 PVIETQGNDVSAFIP 339
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_SPHWW (ATP synthase subunit alpha OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.386e-19
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+G+RPAINVGLSVSRVGS     A+++
Sbjct:  339 PTNVISITDGQIFLETDLFYQGVRPAINVGLSVSRVGSAAQTKAMKK 385

HSP 2 Score: 33.4982 bits (75), Expect = 7.386e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 27.7202 bits (60), Expect = 7.386e-19
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  308 RAAKLNDANGNGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_METS4 (ATP synthase subunit alpha OS=Methylobacterium sp. (strain 4-46) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.386e-19
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS     A+++
Sbjct:  339 PTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSAAQTKAMKK 385

HSP 2 Score: 31.5722 bits (70), Expect = 7.386e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  325 PVIETQANDVSAYIP 339

HSP 3 Score: 30.0314 bits (66), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D  GAGSLTALP
Sbjct:  308 RAAKMGDAAGAGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_METNO (ATP synthase subunit alpha OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.386e-19
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+G+RPA+NVGLSVSRVGS     A+++
Sbjct:  339 PTNVISITDGQIFLETDLFYQGVRPAVNVGLSVSRVGSAAQTKAMKK 385

HSP 2 Score: 31.5722 bits (70), Expect = 7.386e-19
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQA DVSAYIP
Sbjct:  325 PVIETQANDVSAYIP 339

HSP 3 Score: 30.0314 bits (66), Expect = 7.386e-19
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK  D  GAGSLTALP
Sbjct:  308 RAAKMGDAAGAGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ERYLH (ATP synthase subunit alpha OS=Erythrobacter litoralis (strain HTCC2594) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.386e-19
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LET+LFY+G+RPAINVGLSVSRVG      A+++
Sbjct:  339 PTNVISITDGQIFLETDLFYQGVRPAINVGLSVSRVGGAAQTKAMKK 385

HSP 2 Score: 33.4982 bits (75), Expect = 7.386e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  325 PIIETQAGDVSAYIP 339

HSP 3 Score: 29.261 bits (64), Expect = 7.386e-19
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK +D  G GSLTALP
Sbjct:  308 RAAKMNDDNGGGSLTALP 325
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_ANADE (ATP synthase subunit alpha OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.386e-19
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+ LF++G+RPAINVG+SVSRVG    + A++Q
Sbjct:  331 PTNVISITDGQIFLESNLFFQGVRPAINVGISVSRVGGSAQIKAMKQ 377

HSP 2 Score: 33.4982 bits (75), Expect = 7.386e-19
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAYIP
Sbjct:  317 PIIETQAGDVSAYIP 331

HSP 3 Score: 31.5722 bits (70), Expect = 7.386e-19
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ GAGSLTALP
Sbjct:  300 RAAKLSDKEGAGSLTALP 317
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPA_EHRRW (ATP synthase subunit alpha OS=Ehrlichia ruminantium (strain Welgevonden) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.388e-19
Identity = 32/47 (68.09%), Postives = 42/47 (89.36%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQI LE+E+FY+G+RPA+NVGLSVSRVGS   + ++++
Sbjct:  338 PTNVISITDGQIFLESEIFYKGLRPAVNVGLSVSRVGSSAQIKSVKK 384

HSP 2 Score: 33.113 bits (74), Expect = 7.388e-19
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            P+IETQAGDVSAY+P
Sbjct:  324 PIIETQAGDVSAYVP 338

HSP 3 Score: 30.4166 bits (67), Expect = 7.388e-19
Identity = 14/18 (77.78%), Postives = 15/18 (83.33%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAK SD+ G GSLTALP
Sbjct:  307 RAAKMSDKKGGGSLTALP 324
The following BLAST results are available for this feature:
BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_BRUC27.386e-1976.60ATP synthase subunit alpha OS=Brucella canis (stra... [more]
ATPA_BRUAB7.386e-1976.60ATP synthase subunit alpha OS=Brucella abortus GN=... [more]
ATPA_BRUA27.386e-1976.60ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_BRUA17.386e-1976.60ATP synthase subunit alpha OS=Brucella abortus (st... [more]
ATPA_SPHWW7.386e-1974.47ATP synthase subunit alpha OS=Sphingomonas wittich... [more]
ATPA_METS47.386e-1972.34ATP synthase subunit alpha OS=Methylobacterium sp.... [more]
ATPA_METNO7.386e-1972.34ATP synthase subunit alpha OS=Methylobacterium nod... [more]
ATPA_ERYLH7.386e-1972.34ATP synthase subunit alpha OS=Erythrobacter litora... [more]
ATPA_ANADE7.386e-1968.09ATP synthase subunit alpha OS=Anaeromyxobacter deh... [more]
ATPA_EHRRW7.388e-1968.09ATP synthase subunit alpha OS=Ehrlichia ruminantiu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT
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