CV712304

Overview
NameCV712304
Unique NameCV712304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KPC1_DROME (Protein kinase C, brain isozyme OS=Drosophila melanogaster GN=Pkc53E PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  121 IKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSP---VASPKFNENPFKGFTYVRPAASF 447
            +  P  LS EA    KG L K+ +KRLG G  G ++++ H +F+ I+W+K+E RE +P F P++  +  V+NF++ +T+     +P   V     +++ F GF+Y+ P   F
Sbjct:  566 VSYPKSLSKEAKEACKGFLTKQPNKRLGCGSSGEEDVRLHPFFRRIDWEKIENREVQPPFKPKIKHRKDVSNFDKQFTSEKTDLTPTDKVFMMNLDQSEFVGFSYMNPEYVF 677          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KS6A2_HUMAN (Ribosomal protein S6 kinase alpha-2 OS=Homo sapiens GN=RPS6KA2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  115 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN-ENPFKGFTYVRPAASFLQ 459
            +K K+ +P FLS EA SLL+ L ++    RLG+G  G +EIK H +F  I+W  L  +E +P F P V       +F+  +T     DSP   P  N  + F+GF++V  A+S +Q
Sbjct:  272 LKAKLGMPQFLSGEAQSLLRALFKRNPCNRLGAGIDGVEEIKRHPFFVTIDWNTLYRKEIKPPFKPAVGRPEDTFHFDPEFTARTPTDSPGVPPSANAHHLFRGFSFV--ASSLIQ 385          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KPCZ_HUMAN (Protein kinase C zeta type OS=Homo sapiens GN=PRKCZ PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  133 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPG-GSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLL---DSPVASPKFNENPFKGFTYVRP 459
            ++  I++P FLS +A  +LKG L K+  +RLG  P  G  +IKSH +F+ I+W  LE ++  P F P++   + + NF+  +T+ P+    D   A  + +++ F+GF Y+ P
Sbjct:  471 LEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEKKQALPPFQPQITDDYGLDNFDTQFTSEPVQLTPDDEDAIKRIDQSEFEGFEYINP 583          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KPC1B_CAEEL (Protein kinase C-like 1B OS=Caenorhabditis elegans GN=pkc-1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.590e-14
Identity = 39/114 (34.21%), Postives = 64/114 (56.14%), Query Frame = -1
Query:  133 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGS--GPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLL--DSPVASPKFNENPFKGFTYVRP 459
            + D +  P +LS EA ++LK  + K A KRLG     GG   I++H +F+ I+W  LE+R+ +P F P++  K    NF+  +T   P+L    P      N++ F+GF+++ P
Sbjct:  590 LNDDVLYPVWLSKEAVNILKAFMTKNAGKRLGCVVSQGGEDAIRAHPFFREIDWDALESRQVKPPFKPKIKSKRDANNFDSDFTKEEPVLTPSDPAVVRAINQDEFRGFSFINP 703          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: PKN2_MOUSE (Serine/threonine-protein kinase N2 OS=Mus musculus GN=Pkn2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 33/111 (29.73%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  139 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKF----NENPFKGFTYV 459
            + D+++ P FLS+EA S+++ LL++   +RLG+G   ++++K H +F++ +W  L  ++ +P F+P + G+  V+NF++ +T+   + +P   P+      +  F  F YV
Sbjct:  869 VNDEVRYPRFLSTEAISIMRRLLRRNPERRLGAGEKDAEDVKKHPFFRLTDWSALMDKKVKPPFVPTIRGREDVSNFDDEFTSEAPILTPPREPRILLEEEQEMFHDFDYV 979          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KS6B2_MOUSE (Ribosomal protein S6 kinase beta-2 OS=Mus musculus GN=Rps6kb2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  130 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSP--VASPKFNENPFKGFTYVRPA 459
            IK K+ LP +L+ +A  L K  L++  ++R+G G G + +++ H +F+ INW  L AR   P F P +  +  V+ F+  +T    +DSP   A  +     F GFTYV P+
Sbjct:  282 IKGKLVLPPYLTPDARDLAKKFLKRNPTQRIGGGLGDAADVQRHPFFRHINWDDLLARRVDPPFRPSLQSEEDVSQFDARFTRQTPVDSPDDTALSESANQAFLGFTYVAPS 393          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KS6A4_MOUSE (Ribosomal protein S6 kinase alpha-4 OS=Mus musculus GN=Rps6ka4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  109 PAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNE-NPFKGFTYVRPAASFLQRN 438
            P  +   A  LL+ LL K+  KRLG+GP G+QE+KSH +F+ ++W  L AR+    F P++  +  V NF E +T +  + SP  SP   +   F+G+++V P+  F   N
Sbjct:  262 PLRIGPVAQDLLQRLLCKDPKKRLGAGPQGAQEVKSHPFFQGLDWWALAARKIPAPFRPQIRSELDVGNFAEEFTRLEPVYSPAGSPPPGDPRIFQGYSFVAPSILFDHNN 372          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KS6B2_HUMAN (Ribosomal protein S6 kinase beta-2 OS=Homo sapiens GN=RPS6KB2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  130 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSP--VASPKFNENPFKGFTYVRPA 459
            I+ K+ LP +L+ +A  L+K  L++  S+R+G GPG + +++ H +F+ +NW  L A    P F P +  +  V+ F+  +T    +DSP   A  +     F GFTYV P+
Sbjct:  282 IRGKLALPPYLTPDARDLVKKFLKRNPSQRIGGGPGDAADVQRHPFFRHMNWDDLLAWRVDPPFRPCLQSEEDVSQFDTRFTRQTPVDSPDDTALSESANQAFLGFTYVAPS 393          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KPCG_RAT (Protein kinase C gamma type OS=Rattus norvegicus GN=Prkcg PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  133 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTN-MPLLDSP--VASPKFNENPFKGFTYVRP 459
            ++  +  P  LS EA ++ KG L K   KRLGSGP G   I++H +F+ I+W++LE  E  P F P   G+    NF++ +T   P L  P  +     ++  F+GFTYV P
Sbjct:  568 MEQTVTYPKSLSREAVAICKGFLTKHPGKRLGSGPDGEPTIRAHGFFRWIDWERLERLEIAPPFRPRPCGR-SGENFDKFFTRAAPALTPPDRLVLASIDQADFQGFTYVNP 678          
BLAST of CV712304 vs. ExPASy Swiss-Prot
Match: KPCG_MOUSE (Protein kinase C gamma type OS=Mus musculus GN=Prkcg PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 42/112 (37.50%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  133 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTN-MPLLDSP--VASPKFNENPFKGFTYVRP 459
            ++  +  P  LS EA ++ KG L K   KRLGSGP G   I++H +F+ I+W++LE  E  P F P   G+    NF++ +T   P L  P  +     ++  F+GFTYV P
Sbjct:  568 MEQTVTYPKSLSREAVAICKGFLTKHPGKRLGSGPDGEPTIRAHGFFRWIDWERLERLEIAPPFRPRPCGR-SGENFDKFFTRAAPALTPPDRLVLASIDQADFQGFTYVNP 678          
The following BLAST results are available for this feature:
BLAST of CV712304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
KPC1_DROME4.280e-1433.93Protein kinase C, brain isozyme OS=Drosophila mela... [more]
KS6A2_HUMAN5.590e-1437.93Ribosomal protein S6 kinase alpha-2 OS=Homo sapien... [more]
KPCZ_HUMAN5.590e-1434.51Protein kinase C zeta type OS=Homo sapiens GN=PRKC... [more]
KPC1B_CAEEL5.590e-1434.21Protein kinase C-like 1B OS=Caenorhabditis elegans... [more]
PKN2_MOUSE7.301e-1429.73Serine/threonine-protein kinase N2 OS=Mus musculus... [more]
KS6B2_MOUSE1.245e-1334.82Ribosomal protein S6 kinase beta-2 OS=Mus musculus... [more]
KS6A4_MOUSE1.626e-1336.94Ribosomal protein S6 kinase alpha-4 OS=Mus musculu... [more]
KS6B2_HUMAN2.124e-1333.93Ribosomal protein S6 kinase beta-2 OS=Homo sapiens... [more]
KPCG_RAT2.124e-1337.50Protein kinase C gamma type OS=Rattus norvegicus G... [more]
KPCG_MOUSE2.124e-1337.50Protein kinase C gamma type OS=Mus musculus GN=Prk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D07_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712304 ID=CV712304; Name=CV712304; organism=Citrus sinensis; type=EST; length=462bp
TTATTTCCTCTCTCTTTCGGTCATAATTCAGCTACAACGAAAACAAATAT
CCAAGTTTTTCAAGAACCTGCAAACGAGGGGCTCAAAGGTCCCCTGACAA
TATCAAGTGTTCCTTTGAAGAAATGATGCCGCAGGCCTCACATAAGTAAA
CCCCTTGAACGGATTCTCATTAAATTTTGGACTGGCAACAGGAGAATCCA
GCAATGGCATGTTAGTCCAGCACTCCTCAAAGTTAGCAACACAGTGCTTG
CCAGCGACTTCAGGAAGAAAACTTGGCCTAGTTTCCCGAGCCTCCAATTT
CTTCCAATTGATCATCTTGAACCATTTGTGGGATTTTATCTCCTGACTGC
CACCTGGTCCGCTGCCAAGGCGCTTGCTTGCTTCTTTCTGCAGCAGCCCT
TTTAAAAGTGAATGTGCTTCACTTGACAAAAACGCAGGCAACTTGATCTT
ATCCTTAATCCT
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