CV712292

Overview
NameCV712292
Unique NameCV712292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.878e-49
Identity = 88/210 (41.90%), Postives = 131/210 (62.38%), Query Frame = -1
Query:   53 NIHGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 679
            N  GTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E +G+PFP  Q M +Y+S+W A+ WAT+GG  KTDWS APF A Y+ + ++ C         +    C ++++   W+ +    +L+ +   ++  V++ +++Y+YC+D  RFP  +P EC
Sbjct:   80 NSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGSGDKEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGC------VWVNGKSVCPANSQ---WFTQ----KLDSNGQTRMKGVQSKYMVYNYCSDKKRFPRGVPPEC 276          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.087e-48
Identity = 89/210 (42.38%), Postives = 129/210 (61.43%), Query Frame = -1
Query:   53 NIHGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 679
            N  GTVT FY+ S G   +E DFEFLGN +G PY + TNVY  G G++EQ+  LWFDPT  FHTY + WN ++++F VD  PIR   N E  G+PFP  Q M +Y+S+W A+ WAT+GG  KTDWS APF A Y+ + ++ C        A+    C +++    W+ +    +L+ +   ++  V++ +++Y+YC D  RFP  +P EC
Sbjct:   85 NSAGTVTTFYLKSPGTTWDEIDFEFLGNLSGHPYTLHTNVYTKGSGDKEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGC------VWANGKSSCPANSS---WFTQ----QLDSNGQTRMKGVQSKYMVYNYCNDKRRFPRGVPVEC 281          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.421e-48
Identity = 97/208 (46.63%), Postives = 132/208 (63.46%), Query Frame = -1
Query:   53 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKK--CSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 670
            G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P  + M V  S+WN ++WAT GG+ K +WS APF A+++GF    C          NA+K  C SSA   +WW+  + S+L+  +      VR  ++ YDYC+D  RF   P+EC
Sbjct:   97 GVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGC--------FTNAEKNACGSSA---YWWNTGSYSKLSDSEQKAYTNVRQKYMNYDYCSDKVRFHVPPSEC 291          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.911e-43
Identity = 87/215 (40.47%), Postives = 130/215 (60.47%), Query Frame = -1
Query:   53 NIHGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLS----ELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 679
            N  GTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ + M +++++W+   WAT+ G VK DWS APFV SY+G+  +AC         + A   SSS     W  E T +    EL+  +   + W   N++ Y+YC D  RFP   P EC
Sbjct:   86 NSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNAC------VNNNPAGGWSSS-----WCPEGTSAWIHRELDGAELGTVAWAERNYMSYNYCADGWRFPQGFPAEC 287          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.573e-39
Identity = 87/213 (40.85%), Postives = 119/213 (55.87%), Query Frame = -1
Query:   50 GTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACEC-PASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECV 670
            G V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P  + M +Y++IW+A DWAT GG+ K ++  APFVA +K F +D C   P      D    CS S +   + +    S +N HQ   +   R   + Y YC DT R+P    ECV
Sbjct:   90 GVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMD----CSDSVD---FLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLPECV 294          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.019e-38
Identity = 90/216 (41.67%), Postives = 125/216 (57.87%), Query Frame = -1
Query:   53 GTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKC--SSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTEC 670
            G  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP  + M VY SIW+A DWAT+ GR+K D+ + PFVA YK F++  C        AD++  C   S A  R          L+  Q   L W + N L+Y+YC D  R      EC
Sbjct:   95 GVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FPT-RPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCT-------ADSSSSCRPPSPAPMR-------NRGLSRQQMAALTWAQRNFLVYNYCHDPKRDHTQTPEC 293          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.280e-37
Identity = 85/220 (38.64%), Postives = 120/220 (54.55%), Query Frame = -1
Query:   50 GTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAK--------KCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECV 670
            G V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+ + M +Y++IW+A  WAT GG+   D++ +PFV+ +K   +D C    S  G +N           CS S +     D  T+S     Q+  +   R  ++ Y YC DT R+   P ECV
Sbjct:   98 GIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISP---KQATAMRRFRERYMYYSYCYDTIRYSVPPPECV 313          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.126e-36
Identity = 82/215 (38.14%), Postives = 120/215 (55.81%), Query Frame = -1
Query:   53 GTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLM-WVRANHLIYDYCTDTSRFPAIPTEC 670
            G +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR +        P    + M +Y SIW+A  WAT+ G+ K D+ + PF A Y  F+   C   +S      A+    SA        P  S     Q HQ M WV+ + ++Y+YC D  R  ++  EC
Sbjct:   99 GVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSS------ARCYPLSA-------SPYRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKRDHSLTPEC 297          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.236e-35
Identity = 77/212 (36.32%), Postives = 115/212 (54.25%), Query Frame = -1
Query:   50 GTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECV 670
            G V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +YS+IW+   WAT GG+   ++ +AP+V+ +    +  C    +V   +    C   A +         SE+   Q +++   R  H+ Y YC D  R+  + +ECV
Sbjct:   89 GVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGC----AVDPTEKFPSCKDEAVQNL----RLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.290e-33
Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = -1
Query:   50 GTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECV 670
            G V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +Y++IW+   WAT GG+   ++ +AP++A +    +  C     V   +   +C   A +    D     E+   Q  ++   R   + Y YC D +R+    +ECV
Sbjct:   89 GVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGC----PVDPIEQFPRCDEGAAE----DMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVALSECV 291          
The following BLAST results are available for this feature:
BLAST of CV712292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
XTH19_ARATH4.878e-4941.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH1.087e-4842.38Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_ARATH2.421e-4846.63Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ8.911e-4340.47Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH30_ARATH1.573e-3940.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.019e-3841.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH3.280e-3738.64Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH2.126e-3638.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH5.236e-3536.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.290e-3335.85Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712292 ID=CV712292; Name=CV712292; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGC
ACGCACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTC
ATAGATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCA
CATTGAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCA
CTGCTGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCA
CTCACATGCATCAATTTCAAAGCCCTTGTATGATGCAACAAAAGGTGCAT
GGCTCCAGTCCGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCA
TTCCATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAAT
TCCTTTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCA
AAAATACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGTATGAAATTCC
TTTGTTGGGTCGAACCAGAGGTCAAGTCTCTGCTCTCTGTTGCCCACACC
ATTCACATAAACATTGGTTTGGACTAAGTATGGCTCTCCTGTAGTGTTCC
CCAGGAACTCAAAATCGAACTCGTTGTGATTTGGACCGTCTGATGACATA
TAGAAGGCAGTGACAGTTCCATGGATATTGACTTTGGAACTTATCCATTT
GTAACTTCCTCTAGCCCATCAGCCGGCGGAATTTGCACCGGCCTTGGCAT
TGCTCCAAGAGTTGTGGGTGATCTAATTGGCGTGGTAAAAGCATACACTA
CGAGAGTTGGTTCTGGTCCTTTCCCGACGGGAATTTTGGGCCAAGGGGGT
GACCAC
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