CV712292

Overview
NameCV712292
Unique NameCV712292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_PARD8 (Adenylosuccinate synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=purA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+  +M DIDFG+YPFVTSS+    G CTGLG++PR +G++ G+ KAY TRVGSGPFPT +  + GD
Sbjct:  218 EGAQGTMLDIDFGSYPFVTSSNTICAGCCTGLGVSPRNIGEVYGIFKAYCTRVGSGPFPTELFDEVGD 285          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_DICDI (Adenylosuccinate synthetase OS=Dictyostelium discoideum GN=purA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  650 IEGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPT 829
            IEG+ S+M D+DFG YP+VTSS+ S GG CTGLGI+P  V   IGVVKAYTT+VGSGPFPT
Sbjct:  219 IEGAQSTMLDLDFGCYPYVTSSASSVGGACTGLGISPNKVVTQIGVVKAYTTKVGSGPFPT 279          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_CLONN (Adenylosuccinate synthetase OS=Clostridium novyi (strain NT) GN=purA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+  S+ DID+GTYP+VTSSS  AGG+CTG G+ P  +   +G+ KAYTTRVG GPFPT +L + G+
Sbjct:  221 EGAQGSLLDIDYGTYPYVTSSSTVAGGVCTGAGVGPTAITGAVGIAKAYTTRVGKGPFPTELLDEMGE 288          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_BIFLI (Adenylosuccinate synthetase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=purA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+ ++M D+D GTYPFVTSS+P+AGG CTG G+ P  +  +IGV KAY TRVG GPFPT +L + G+
Sbjct:  220 EGAQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVIGVSKAYVTRVGEGPFPTELLDESGE 287          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_BIFLD (Adenylosuccinate synthetase OS=Bifidobacterium longum (strain DJO10A) GN=purA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.430e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+ ++M D+D GTYPFVTSS+P+AGG CTG G+ P  +  +IGV KAY TRVG GPFPT +L + G+
Sbjct:  220 EGAQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVIGVSKAYVTRVGEGPFPTELLDESGE 287          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_GEOSL (Adenylosuccinate synthetase OS=Geobacter sulfurreducens GN=purA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+  ++ D+D GTYPFVTSSS  AGG CTG G++PR + ++IG+ KAY TRVGSGPFPT +L   G+
Sbjct:  222 EGAQGTLLDVDHGTYPFVTSSSTCAGGACTGTGVSPRDIHEIIGISKAYVTRVGSGPFPTELLDADGE 289          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_BIFAA (Adenylosuccinate synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=purA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.398e-17
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  656 GSDSSMDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            G  + +D+D GTYPFVTSS+P+AGG CTG G+ P  +  ++GV KAY TRVG GPFPT + G+ G+
Sbjct:  222 GQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVVGVSKAYVTRVGEGPFPTELFGEEGE 287          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_PROVI (Adenylosuccinate synthetase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=purA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  650 IEGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            +EG+  S+ D+D GTYPFVTSS+P++GG CTG GIAP  +G +IGV KAY TRVG+G FPT +  + G+
Sbjct:  230 LEGAQGSLLDVDHGTYPFVTSSNPTSGGACTGSGIAPNHIGKVIGVCKAYMTRVGNGAFPTELFDETGE 298          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_GEOMG (Adenylosuccinate synthetase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=purA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTGILGQGGD 853
            EG+  ++ D+D GTYPFVTSSS  AGG CTG G+ PR + ++IG+ KAY TRVGSGPFPT +L   G+
Sbjct:  222 EGAQGTLLDVDHGTYPFVTSSSTCAGGACTGTGVGPRDIHEIIGISKAYVTRVGSGPFPTELLDADGE 289          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: PURA_FLAPJ (Adenylosuccinate synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=purA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.097e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  653 EGSDSSM-DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPT 829
            EG+  S+ D+DFGTYPFVTSS+ +A G CTGLGIAP  + ++ G+ KAYTTRVGSGPFPT
Sbjct:  221 EGAQGSLLDVDFGTYPFVTSSNTTAAGACTGLGIAPNKIKEVYGIFKAYTTRVGSGPFPT 280          
The following BLAST results are available for this feature:
BLAST of CV712292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PURA_PARD86.430e-1758.82Adenylosuccinate synthetase OS=Parabacteroides dis... [more]
PURA_DICDI6.430e-1770.49Adenylosuccinate synthetase OS=Dictyostelium disco... [more]
PURA_CLONN6.430e-1757.35Adenylosuccinate synthetase OS=Clostridium novyi (... [more]
PURA_BIFLI6.430e-1758.82Adenylosuccinate synthetase OS=Bifidobacterium lon... [more]
PURA_BIFLD6.430e-1758.82Adenylosuccinate synthetase OS=Bifidobacterium lon... [more]
PURA_GEOSL8.398e-1758.82Adenylosuccinate synthetase OS=Geobacter sulfurred... [more]
PURA_BIFAA8.398e-1756.06Adenylosuccinate synthetase OS=Bifidobacterium ado... [more]
PURA_PROVI1.097e-1657.97Adenylosuccinate synthetase OS=Prosthecochloris vi... [more]
PURA_GEOMG1.097e-1658.82Adenylosuccinate synthetase OS=Geobacter metallire... [more]
PURA_FLAPJ1.097e-1666.67Adenylosuccinate synthetase OS=Flavobacterium psyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712292 ID=CV712292; Name=CV712292; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGC
ACGCACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTC
ATAGATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCA
CATTGAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCA
CTGCTGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCA
CTCACATGCATCAATTTCAAAGCCCTTGTATGATGCAACAAAAGGTGCAT
GGCTCCAGTCCGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCA
TTCCATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAAT
TCCTTTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCA
AAAATACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGTATGAAATTCC
TTTGTTGGGTCGAACCAGAGGTCAAGTCTCTGCTCTCTGTTGCCCACACC
ATTCACATAAACATTGGTTTGGACTAAGTATGGCTCTCCTGTAGTGTTCC
CCAGGAACTCAAAATCGAACTCGTTGTGATTTGGACCGTCTGATGACATA
TAGAAGGCAGTGACAGTTCCATGGATATTGACTTTGGAACTTATCCATTT
GTAACTTCCTCTAGCCCATCAGCCGGCGGAATTTGCACCGGCCTTGGCAT
TGCTCCAAGAGTTGTGGGTGATCTAATTGGCGTGGTAAAAGCATACACTA
CGAGAGTTGGTTCTGGTCCTTTCCCGACGGGAATTTTGGGCCAAGGGGGT
GACCAC
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