CV712266

Overview
NameCV712266
Unique NameCV712266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_BOVIN (Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 5.209e-38
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP+YLVEIQ PEQ +GGIY VLN+KRGHVFEE Q  GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++  DP +  S+ SQ+V + RKRKGLKE +  +  + DKL
Sbjct:  741 MEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEETQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_SACCA (Elongation factor 2 OS=Saccharomyces castellii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.161e-37
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = -1
Query:  167 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 517
            EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+  LR AT GQAFPQ VFDHW  + SDPL+P S+A ++V   RKR G+KE +    EY DKL
Sbjct:  726 EPVFLVEIQCPESAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGSDPLDPTSKAGEIVTAARKRHGMKEVVPGWQEYYDKL 842          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.161e-37
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++  DP EP S+   +V + RKRKGLKE +  +++Y DKL
Sbjct:  727 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 844          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.410e-37
Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            LEP++LVEI AP++ +GGIY+ LNQ+RGHVF E  + GTP   IKAYLPV +SF F++ LRAATSG+AFPQCVFDHW++++ DPLE GS+  +LV  IR+RK +KE++  +  Y DKL
Sbjct:  715 LEPMFLVEISAPQEVVGGIYATLNQRRGHVFHEEPKSGTPQVEIKAYLPVADSFKFTTVLRAATSGKAFPQCVFDHWELINGDPLEKGSKTEELVKAIRRRKNIKEEIPALDNYLDKL 832          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.368e-36
Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKYYI 871
            L+ L+ L+I YPMLFE+ N  + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+DISN KA+LE +LR ++ LT  D IM+ YNN KYY+
Sbjct:   57 LNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYL 173          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.419e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKY 865
            LD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+N KA+LE  LRN++CLTTGD I + YN K Y
Sbjct:   53 LDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIY 167          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.419e-35
Identity = 67/115 (58.26%), Postives = 92/115 (80.00%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKY 865
            LD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+N KA+LE  LRN++CLTTGD I + YN K Y
Sbjct:   53 LDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIY 167          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_DEBHA (Elongation factor 2 OS=Debaryomyces hansenii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.419e-35
Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  167 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 517
            EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGFS  LR +T GQAFPQ +FDHW  ++ DP +P S+   +V + R+R+G+K  +    EY DKL
Sbjct:  726 EPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRPGTPLFTVKAYLPVNESFGFSGELRQSTGGQAFPQLIFDHWANLNGDPTDPTSKVGTIVKEKRERQGMKPDVPGYEEYYDKL 842          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_ENTHI (Elongation factor 2 OS=Entamoeba histolytica GN=EF-2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.853e-35
Identity = 67/118 (56.78%), Postives = 91/118 (77.12%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            LEP+YL EIQ PE A+GGIY+V++++RG +  E QRPGTPL+N++AYLPV ESFGF++ LR+ TSGQAFPQCVFDHW +++ D  +  S+   +V  IRKRKGL E +  + ++ DKL
Sbjct:  723 LEPMYLAEIQCPESAIGGIYTVMSRRRGKIISEEQRPGTPLFNVRAYLPVCESFGFTADLRSHTSGQAFPQCVFDHWQLLNGDVTDATSKVGSIVAAIRKRKGLPEGVPGLDKFYDKL 840          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.420e-35
Identity = 66/115 (57.39%), Postives = 92/115 (80.00%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKY 865
            LD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+N KA+LE  LRN++C+TTGD I + YN K Y
Sbjct:   53 LDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIY 167          
The following BLAST results are available for this feature:
BLAST of CV712266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
EF2_BOVIN5.209e-3861.86Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=... [more]
EF2_SACCA1.161e-3764.96Elongation factor 2 OS=Saccharomyces castellii GN=... [more]
EF2_BOMMO1.161e-3761.86Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_CRYPV4.410e-3759.32Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
UFD1_DICDI6.368e-3658.12Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT1.419e-3558.26Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN1.419e-3558.26Ubiquitin fusion degradation protein 1 homolog OS=... [more]
EF2_DEBHA1.419e-3559.83Elongation factor 2 OS=Debaryomyces hansenii GN=EF... [more]
EF2_ENTHI1.853e-3556.78Elongation factor 2 OS=Entamoeba histolytica GN=EF... [more]
UFD1_MOUSE2.420e-3557.39Ubiquitin fusion degradation protein 1 homolog OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712266 ID=CV712266; Name=CV712266; organism=Citrus sinensis; type=EST; length=871bp
TGAATGGAATAACAGAATTTGAACGTCCAAACTTAAATAAACAGAGGCTA
CAACAACAAACTCAGATAAGTCAACATTGTTTCCTTCAAAGAAAAAAACA
GAACAAAACCAAAGGCAGCAAAAAATGAATCTAGTCGCCAGCAATCGATA
ATGGCAAAAGCGCTTACAGCTTGTCTTCATATTCAGAGACGGGGGTCATC
TGTTCCTTCAAACCCTTCCTCTTCCTAATATCCAAAACAAGCTGTGAAGC
CTGGGATCCCGGCTCCAATGGATCAGATGACATCATGTCCCAGTGATCAA
ACACACATTGAGGGAATGCCTGTCCAGAGGTTGCAGCTCTCAAAGTGCTG
GAAAATCCAAAAGACTCAACGACCGGGAGGTATGCCTTGATGTTATAAAG
TGGGGTACCAGGTCTCTGCATCTCCTCAAAAACGTGACCACGTTTCTGGT
TAAGAACACTGTAAATACCACCAAGTGCCTGTTCAGGAGCTTGGATTTCC
ACCAAGTAGACAGGCTCAAGCTTGATCGCCTTGCATCTTTGCATATTGAT
TATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTGAGCGGGTTTCCCA
CTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATGATCTATATGCCAT
ACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGATATTGTGCGAGTG
AAAAATGTGACACTTCCAAAGGGAACATATGTCAAACTTCAACCTCACAC
AAAGGACTTTCTCGATATTTCTAATCACAAAGCCATCTTGGAGACGACAT
TAAGGAATTATTCCTGCTTGACCACTGGGGACAGTATTATGGTGGCATAT
AACAATAAGAAATATTACATT
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