CV712266

Overview
NameCV712266
Unique NameCV712266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.128e-35
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  167 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 517
            EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGF+  LR AT GQAFPQ +FDHW +MS D  +  S+   +V + R R GLK ++   +EY DKL
Sbjct:  726 EPVFLVEIQCPENAIGGIYSVLNKKRGQVISEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQLIFDHWQVMSGDVTDENSKPGAIVKEKRVRAGLKPEVPEYTEYYDKL 842          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.041e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKY 865
            LD L  L+++YPMLF+L N    R SH GVLEF+A+EG  Y+P+WMMENLLL EGDI+ +++V+LP  T+ K QPH+ DFLDI+N KA+LE  LRN++CLT GD I + YN K Y
Sbjct:   50 LDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVY 164          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.195e-35
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  167 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 517
            EPV+LVEIQ PE A+GGIYSVLN+KRG V  E QRPGTPL+ +KAYLPV ESFGFS  LR AT GQAFPQ VFDHW ++S D  +P S+   +    R+R+GLK ++    EY DKL
Sbjct:  726 EPVFLVEIQCPENAIGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFSGDLRQATGGQAFPQLVFDHWAVLSGDVTDPTSKPGIIAKAKRERQGLKPEVPGYEEYYDKL 842          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.046e-33
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = -1
Query:  167 MQRCKAIKLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS-SDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 544
            M + + I +EPV+L EIQ P    GGIY VL ++RGHVFEE+   GTP+ NIK+YLPV ESFGF+  LR AT+GQAFPQCVF HW   +  DPL  G++ +++V  IR RKGL  ++     Y DKL
Sbjct:  741 MLKAEPILVEPVFLCEIQVPRAVSGGIYGVLTRRRGHVFEEIDEVGTPMMNIKSYLPVAESFGFTQDLRGATAGQAFPQCVFSHWQAYNGGDPLTEGTKTNEMVKSIRNRKGLAPEVPTPERYLDKL 867          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 1.917e-32
Identity = 63/117 (53.85%), Postives = 88/117 (75.21%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKYYI 871
            L++L+ L++ YPMLF+  N AAE+ +H GVLEFIAEEG +Y+PYWMM  L L+ GD+VRV N  + +G+YVKLQP + +FLDI++H+A+LE  LRN+S LT  D   + YN++ Y I
Sbjct:   65 LEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQI 181          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.795e-30
Identity = 64/118 (54.24%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            LEP+YLVEI APE A+GGIYSVLN++RG V  E +R G+PL+++KA+LPV+ESFGF++ LR+ T+GQAFPQCVFDHW   S   +    +A+++ L  RKRKGL  ++  + ++ +KL
Sbjct:  724 LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW--ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL 839          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.384e-29
Identity = 61/117 (52.14%), Postives = 84/117 (71.79%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAYNNKKYYI 871
            L +L+ L+I YPMLF+L  N   RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ +  +P G +VKL+P + DFLDIS+ KA+LE  LRN+S LT  D I ++YN K + I
Sbjct:   55 LSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKI 171          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.204e-26
Identity = 56/110 (50.91%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  521 LDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNHKAILETTLRNYSCLTTGDSIMVAY 850
            L+ L   +I  PMLF+L N A +RV+HCGVLEF A EG   +P WMM+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+N KA+LE  LR Y+CLT  D I  +Y
Sbjct:   57 LNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSY 166          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P ++SFGF + LR  T GQAF   VF HW ++  DPL+                A + ++  R+RKGL E ++    ++D +
Sbjct:  828 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957          
BLAST of CV712266 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  167 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG------------SQASQLVLDIRKRKGLKEQMTPVSEYEDKL 520
            +EP Y VE+QAP   +  +Y+VL ++RGHV ++   PG+PLY IKA++P ++SFGF + LR  T GQAF   VF HW ++  DPL+                A + ++  R+RKGL E ++    ++D +
Sbjct:  827 MEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956          
The following BLAST results are available for this feature:
BLAST of CV712266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
EF2_CANAL4.128e-3560.68Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
UFD1_DROME7.041e-3558.26Ubiquitin fusion degradation protein 1 homolog OS=... [more]
EF2_PICGU9.195e-3561.54Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_BLAHO5.046e-3353.54Elongation factor 2 OS=Blastocystis hominis PE=2 S... [more]
UFD1_SCHPO1.917e-3253.85Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
EF2_DICDI1.795e-3054.24Elongation factor 2 OS=Dictyostelium discoideum GN... [more]
UFD1_YEAST3.384e-2952.14Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL1.204e-2650.91Ubiquitin fusion degradation protein 1 homolog OS=... [more]
U5S1_PONAB1.377e-2238.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.377e-2238.46116 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C11_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712266 ID=CV712266; Name=CV712266; organism=Citrus sinensis; type=EST; length=871bp
TGAATGGAATAACAGAATTTGAACGTCCAAACTTAAATAAACAGAGGCTA
CAACAACAAACTCAGATAAGTCAACATTGTTTCCTTCAAAGAAAAAAACA
GAACAAAACCAAAGGCAGCAAAAAATGAATCTAGTCGCCAGCAATCGATA
ATGGCAAAAGCGCTTACAGCTTGTCTTCATATTCAGAGACGGGGGTCATC
TGTTCCTTCAAACCCTTCCTCTTCCTAATATCCAAAACAAGCTGTGAAGC
CTGGGATCCCGGCTCCAATGGATCAGATGACATCATGTCCCAGTGATCAA
ACACACATTGAGGGAATGCCTGTCCAGAGGTTGCAGCTCTCAAAGTGCTG
GAAAATCCAAAAGACTCAACGACCGGGAGGTATGCCTTGATGTTATAAAG
TGGGGTACCAGGTCTCTGCATCTCCTCAAAAACGTGACCACGTTTCTGGT
TAAGAACACTGTAAATACCACCAAGTGCCTGTTCAGGAGCTTGGATTTCC
ACCAAGTAGACAGGCTCAAGCTTGATCGCCTTGCATCTTTGCATATTGAT
TATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTGAGCGGGTTTCCCA
CTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATGATCTATATGCCAT
ACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGATATTGTGCGAGTG
AAAAATGTGACACTTCCAAAGGGAACATATGTCAAACTTCAACCTCACAC
AAAGGACTTTCTCGATATTTCTAATCACAAAGCCATCTTGGAGACGACAT
TAAGGAATTATTCCTGCTTGACCACTGGGGACAGTATTATGGTGGCATAT
AACAATAAGAAATATTACATT
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