CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.059e-37
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E   ++       Y+ +K +V+++  + FRPEFLNR+DE +VF PL  + I  I  IQ+ R+  RL++K   L  + +A+ L+  +GFDP +GARP+KR IQQ VEN +A +IL G+I
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFATLD------YQGIKSEVMDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEI 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.689e-37
Identity = 79/158 (50.00%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y+ +K+QV+E+  + FRPEFLNR+DE +VF PL    I  I  IQ+NR+ +R+++    L  + +A+ L+  +GFDP +GARP+KR IQQ +EN +A +IL G +
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAMLD------YQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSV 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.587e-37
Identity = 81/154 (52.60%), Postives = 107/154 (69.48%), Query Frame = -3
Query:  322 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSN+GSH I E   S  DS E VY  MK  V+E+ +  FRPEF+NR+D+ +VF PLD  +I +I  IQ+  ++ RL + ++ L     A+ LLG +GFDP +GARP+KR IQ  +EN +A  IL
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQEL--SGDDSPE-VYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQIL 837          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.587e-37
Identity = 79/158 (50.00%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y+ +K+QV+E+  + FRPEFLNR+DE +VF PL    I  I  IQ+NR+ +R+++    L  + +A+ L+  +GFDP +GARP+KR IQQ +EN +A +IL G +
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFAMLD------YQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAGSV 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.587e-37
Identity = 80/155 (51.61%), Postives = 110/155 (70.97%), Query Frame = -3
Query:  319 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILK 783
            FN+LLQ+LDDGRITDSQGRT+ F N V++MTSNIGS +ILE        +EA  + ++ +V+   RQ FRPEFLNRID+ I+FQPL   ++ +IV+IQ+ R+K  L ++ I L+ T  A   L   G+DP +GARP+KR IQ+L+EN +A  IL+
Sbjct:  699 FNLLLQVLDDGRITDSQGRTIDFCNAVIVMTSNIGSQFILE-----MGEEEASLDAVELKVLGALRQHFRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLAEQAIALNVTPAAAANLADRGYDPVYGARPLKRAIQRLIENPVASLILE 848          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.991e-37
Identity = 74/158 (46.84%), Postives = 114/158 (72.15%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNI LQ+LDDGR+TD++G+TV F NC++IMTSNIGS Y+LE  +     ++ + E +K +V    +  F+PEFLNR+D+ I+F+PL ++EI+KI++I +  +++RLK + I L  T+ A  L+   G+D  +GARP+KR I+ ++E +IA  I+KGDI
Sbjct:  693 FNIFLQILDDGRLTDNKGKTVDFKNCIIIMTSNIGSSYLLENKK-----EDGIDETVKNKVSNALKDRFKPEFLNRLDDIIMFKPLTNREITKIIDIFLQDIENRLKDRNITLIVTENAKELMAKEGYDAIYGARPLKRYIENILETKIAKQIIKGDI 845          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.991e-37
Identity = 77/158 (48.73%), Postives = 111/158 (70.25%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN++LQ+LDDGR+TD QGRTV FTN V+I+TSNIGS  ILE     +      +  M+++V E  +  FRPEFLNR+D+ I+F+ L+ +E+ +IV +Q+ R++ RL+Q+K+DL  +  A   L  +GFDP +GARP+KR IQ+ +E  IA AIL G +
Sbjct:  692 FNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILELAGDPEQ-----HTAMEQRVNEALKAKFRPEFLNRLDDQIIFRSLEKEELRRIVSLQVERLRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLKRAIQRELETPIAKAILAGQL 844          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 81/156 (51.92%), Postives = 107/156 (68.59%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSN+GSH I E   S  DS E VY  MK  V+ + +  FRPEF+NR+D+ +VF PLD  +I +I  IQ+  ++ RL + ++ L     A+ LLG +GFDP +GARP+KR IQ  +EN +A  IL G
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQEL--SGDDSPE-VYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILAG 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 80/156 (51.28%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y+ +K+QV+++  + FRPEFLNR+DE +VF PL  + I  I  IQ+ R++ RL ++   L    EA+ L+  +GFDP +GARP+KR IQQ VEN +A +IL G
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQENFARLD------YQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAG 836          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +    FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_VIBPA2.059e-3750.63Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_VIBVY2.689e-3750.00Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_XYLFA4.587e-3752.60Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_VIBVU4.587e-3750.00Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB2_SYNE74.587e-3751.61Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_CLOTE5.991e-3746.84Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB1_SYNPX5.991e-3748.73Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB_XYLFT7.825e-3751.92Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_VIBCH7.825e-3751.28Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_SHIFL7.825e-3750.00Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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