CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FNILLQ+LDDGR+TD QGRTV F N V+IMTSN+GS  I E   ++       YE +K  V+E+  Q FRPEF+NR+DE +VF PL  + I  I  IQ+ R+ +RLK+K  +L   + A+  +   GFDP +GARP+KR IQQ +EN +A  IL G ++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQENFGNLN------YEGIKNMVLEVVSQYFRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLE 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +    FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +    FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/158 (50.00%), Postives = 107/158 (67.72%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +    FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.825e-37
Identity = 79/159 (49.69%), Postives = 110/159 (69.18%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN+LLQ+LDDGR+TD QGRTV F N ++IMTSNIGS  ILE  Q  +D+     E +K  V++  R  FRPEFLNR+D+ IVF  L +K++  IV+IQ+  ++ RL +++I LH T++A   L  LG+DP +GARP++R I Q +E  +A  IL G I+
Sbjct:  677 FNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLILEMQQRGEDA-----ETIKSAVMDELRGEFRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETPLAREILGGQIQ 830          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.022e-36
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSN+GSH I E   S  DS EA Y  MK  V+ + +  FRPEF+NR+D+ +VF PLD  +I  I  IQ+  ++ RL ++ + L     A+ +LG +GFDP +GARP+KR IQ  VEN +A  IL G
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQEL--SGDDSAEA-YTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDAALEVLGSVGFDPVYGARPLKRAIQSQVENPLAQQILSG 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.022e-36
Identity = 81/155 (52.26%), Postives = 114/155 (73.55%), Query Frame = -3
Query:  319 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILK 783
            FN+LLQ+LDDGRITDSQGRTV F N V+IMTSN+GS +IL+   +  DS+   YE M+++V++ A++ FRPEFLNRID+ I+F  L   E+++I +IQ+ RV+  L  +KI L  T  A+  L  +GFDP +GARP+KR IQ+ +EN +AV +L+
Sbjct:  701 FNVLLQVLDDGRITDSQGRTVDFRNTVIIMTSNLGSEHILDL--AADDSR---YEEMRQRVLQSAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPAALDHLVAVGFDPVYGARPLKRAIQRELENPLAVKLLE 850          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.335e-36
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GSH I       Q++    Y  MK+ V+ +  Q FRPEF+NRIDE +VF PL  + I +I  IQ+ R+  R++     LH+T   +  +G +G+DP +GARP+KR IQQ +EN +A  IL G +
Sbjct:  686 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLI-------QENSTLDYPSMKELVMSVVGQHFRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDFIGEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKL 836          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.973e-36
Identity = 79/158 (50.00%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E   S+       Y+ MK  V+ +    FRPEF+NRIDE +VF PL  + +S I +IQ+ R+  RL+++   +  T++A+ +L   GFDP +GARP+KR IQQ +EN +A  IL G +
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDMIQERFGSLN------YDEMKDIVMGIVSHNFRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.884e-36
Identity = 81/156 (51.92%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSN+GSH I E   S   S EA Y  MK  V+ + +  FRPEF+NR+D+ +VF PLD  +I  I  IQ+  ++ RL ++ + L     A+ LLG +GFDP +GARP+KR IQ  VEN +A  IL G
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQEL--SGDGSAEA-YTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDPALELLGNVGFDPVYGARPLKRAIQSQVENPLAQQILSG 839          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_PHOPR7.825e-3749.69Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_ECOLI7.825e-3750.00Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL67.825e-3750.00Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO577.825e-3750.00Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_DEIRA7.825e-3749.69Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_XANAC1.022e-3651.92Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB2_THEEB1.022e-3652.26Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_PASMU1.335e-3650.00Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_PHOLL2.973e-3650.00Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_XANCP3.884e-3651.92Chaperone protein clpB OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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