CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.884e-36
Identity = 75/159 (47.17%), Postives = 112/159 (70.44%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQD-SKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TDS+GRTV+F N ++IMTSNIG+  I   ++ ++    +A    +K+++ +L +Q  RPEFLNRIDE I+F PL  + + +IV IQ NR+K+  ++++I L  + EA+  L   GFDP FGARP+KRV+Q+ + N ++  IL G +
Sbjct:  260 FNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNIGAQLIQSEMEHLEGRDADAALAGLKEKLFQLLKQQVRPEFLNRIDEVILFTPLTRENLREIVTIQFNRIKETARRQRITLEISDEALMWLAKTGFDPAFGARPLKRVMQRQITNRLSEMILAGQV 418          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.072e-36
Identity = 79/159 (49.69%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FNILLQ+LDDGR+TD QGRTV F N V+IMTSN+GS  IL+   S    +EAV E +        R+ FRPEFLNRIDE ++F+ L   +IS IV++Q++ V  RL+ KKI + + +EA+  L   G+DP +GARP+KRVIQ  + N ++  I+ G +K
Sbjct:  689 FNILLQVLDDGRLTDGQGRTVDFKNTVLIMTSNVGSQSILDPGMSENQKREAVNEAL--------RERFRPEFLNRIDEIVMFKSLGEAQISGIVKVQLDLVAQRLRAKKIGIDFNQEAIDFLAKKGYDPIYGARPLKRVIQTELLNPLSKEIISGKVK 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 77/155 (49.68%), Postives = 104/155 (67.10%), Query Frame = -3
Query:  319 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILK 783
            FNILLQ+LDDGRITDSQGRTV F N V++MTSNIGS +IL+         +  YE M+ +V++  R  FRPEFLNR+D+ I+F  L   E+S I+ IQ+ RV+  L+ +KI    +  A   L   G+DP +GARP+KR IQ+ +EN +A  IL+
Sbjct:  696 FNILLQVLDDGRITDSQGRTVDFRNTVIVMTSNIGSEHILDV-----SGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILE 845          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 75/155 (48.39%), Postives = 110/155 (70.97%), Query Frame = -3
Query:  322 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQ-DSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAIL 783
            FN+LLQ+LDDGR+TD++G  V+F N ++IMTSN+GS  I E +Q++  +++ ++      +V++L + T RPEFLNRIDE IVF PL  KEI +IV +Q++ +  +L    + LHYT+  VT     G+DP FGARPVKRV+Q+ V NE++ A+L
Sbjct:  685 FNVLLQVLDDGRLTDNKGHVVNFKNTLIIMTSNLGSDIIRERMQNLTAENRRSLTARTADEVMQLLKHTIRPEFLNRIDETIVFTPLTEKEIYEIVRLQLDGIVRQLADNDVVLHYTEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALL 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I       Q +K+  Y  MK  V+ +  Q FRPEF+NRIDE +VF PL  + I  I  IQ+ R+  R++ +  +L +T   +  +G +G+DP +GARP+KR IQQ +EN +A  IL G
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI-------QGNKDESYSEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDALLDFIGEVGYDPIYGARPLKRAIQQEIENSLAQQILSG 835          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSN+GS       Q +Q      YEV+K+ V +  + TFRPEFLNRIDE +VF  L+++ I  I  IQ+ R+ +RL+++++ L  +  A+  +   GFDP FGARP+KR IQQ +EN +A  IL+G
Sbjct:  693 FNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGS-------QHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEG 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSN+GS       Q +Q      YEV+K+ V +  + TFRPEFLNRIDE +VF  L+++ I  I  IQ+ R+ +RL+++++ L  +  A+  +   GFDP FGARP+KR IQQ +EN +A  IL+G
Sbjct:  693 FNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGS-------QHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEG 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.476e-35
Identity = 78/156 (50.00%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSN+GS  I E            Y+ MK  V+E+  Q FRPEF+NRIDE +VF  L  ++I  I  IQ++R+K RLK+K   L  + +A+  L  LG+DP +GARP+KRV+QQ +EN ++  IL+G
Sbjct:  689 FNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSDLIREF-------SGENYDKMKDAVMEVVAQHFRPEFINRIDEAVVFHSLKKEQIRNIAIIQIDRIKKRLKEKDYQLTISDDALDYLSELGYDPVYGARPLKRVLQQQLENPLSQKILEG 837          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.476e-35
Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSN+GS       Q +Q      YEV+K+ V +  + TFRPEFLNRIDE +VF  L+++ I  I  IQ+ R+ +RL+++++ L  +  A+  +   GFDP FGARP+KR +QQ +EN +A  IL+G
Sbjct:  693 FNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGS-------QHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSGFDPVFGARPLKRAVQQQIENPVAKLILEG 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.476e-35
Identity = 75/159 (47.17%), Postives = 110/159 (69.18%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDS-KEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD++GR V+F N ++IMTSN+GS YI   ++ +  S KE V E  KK+V+ + ++  RPEFLNRIDE I+F PL   EI +IV +Q+  V+  L +  ++L  T  A+  L  +G+DP FGARPVKR IQ+ + N+++  +L  ++
Sbjct:  685 FNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEV 843          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB1_CHLTE3.884e-3647.17Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
CLPB_BDEBA5.072e-3649.69Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB1_ANASP8.652e-3649.68Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_PORGI1.130e-3548.39Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_HAEIN1.130e-3550.00Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_BORPE1.130e-3549.36Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORBR1.130e-3549.36Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_COXBU1.476e-3550.00Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_BORPA1.476e-3548.72Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BACTN1.476e-3547.17Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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