CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.517e-35
Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK  V+++    FRPEF+NRIDE +VF PL    ++ I  IQ+ R+  RL+++  ++  T+ A+  LG  GFDP +GARP+KR IQQ +EN +A  IL G +
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQEHFGQMN------YSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.517e-35
Identity = 77/155 (49.68%), Postives = 108/155 (69.68%), Query Frame = -3
Query:  319 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILK 783
            FNILLQ+LDDGRITDSQGR V F N +++MTSNIGS +IL        + +A Y+ M+KQV++  R+ FRPEFLNRID+ I+F  L   E+ +IV +Q+ R++  L ++KI L  +  A+  +   G+DP +GARP+KR IQ+ +EN IA  IL+
Sbjct:  702 FNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSDHILSL-----SADDADYDKMQKQVLQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLKRAIQRQLENPIATKILE 851          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.288e-35
Identity = 79/158 (50.00%), Postives = 103/158 (65.19%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+G+H I       Q++ E  Y  MK+ V+ +  Q FRPEF+NRIDE +VF PLD + I  I  IQ+ R+  RL ++   +  +  A+  +   GFD  FGARP+KR IQQ +EN +A  IL G +
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGAHLI-------QENAEITYLAMKEMVMSVVSQHFRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISDTALDHISQAGFDSLFGARPLKRAIQQELENPLAQQILSGKL 837          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.288e-35
Identity = 78/156 (50.00%), Postives = 103/156 (66.03%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSNIGS       Q +Q      Y+V+K  V+   +  FRPEF+NRIDE +VF  LD K I  I  IQ+  +++RL + ++ L  + EA+ LL   GFDP +GARP+KR IQ  +EN +A AIL G
Sbjct:  691 FNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGS-------QQIQAMATDDYQVIKLAVMAEVKTQFRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISDEALALLSEAGFDPVYGARPLKRAIQAELENPLAKAILAG 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.294e-35
Identity = 76/159 (47.80%), Postives = 111/159 (69.81%), Query Frame = -3
Query:  307 NILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET-LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 780
            ++ LQ+LDDGR+TDS GRTV F N V+IMTSNIGS Y+L   + + +++    +E  K++V+E  +   RPEF+NRIDE IVF+PL  +E+SKI+++ +  V  RL ++ I +  T+EA   L   G+DP FGARP+KR IQ+ VE  +A  I++G+IK
Sbjct:  809 DLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNIGSQYLLNIPVDADEETLNREFEKAKEKVLEELKLYMRPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTEEAKKELVRRGYDPAFGARPLKRTIQKYVETPLADKIIRGEIK 967          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.249e-34
Identity = 75/157 (47.77%), Postives = 108/157 (68.79%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FN+LLQ+LDDGRITDSQGRT+ F N V+IMTSNIGS  IL          +A YE M+++V+   +  FRPEFLNR+D+ I+F+ L   +++ IV++Q+ R++ RL  +KI L  ++ A+  +   G+DP +GARP+KR IQ  + N +A  +LKGD
Sbjct:  694 FNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAILRL-----GGNDAYYEQMREEVMRAMQVHFRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQNELVNPLARGLLKGD 845          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.131e-34
Identity = 72/158 (45.57%), Postives = 110/158 (69.62%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+ LQ+LDDGR+TD++G+TV F N ++IMTSNIGS Y+LE       S E + + +++ V+   +  F+PEFLNR+D+ I+F+PL S+ I KI++I +  V++RL+++ I L  T  A  +L   G+DP +GARP+KR I  ++E EIA  I+ G+I
Sbjct:  694 FNLFLQILDDGRLTDNKGKTVDFKNTIIIMTSNIGSGYLLEN-----KSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEI 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.635e-34
Identity = 74/156 (47.44%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+ LQ+LDDGR+TD QGR V F N ++IMTSNIGS YIL T + +   KE + +++        R  FRPEFLNRIDE + F  L+ + I KIV+IQ+  V +RL+ +++ L  + +A   L  +G+DP FGARP+KR IQ  +EN++A  +L+G
Sbjct:  691 FNVFLQILDDGRLTDGQGRVVDFKNTIIIMTSNIGSEYIL-TAKDMGSIKEEINQIL--------RDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKAKDFLADIGYDPMFGARPLKRAIQAELENKLAREVLEG 837          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.635e-34
Identity = 76/156 (48.72%), Postives = 108/156 (69.23%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+L+DGR+TDS GRTV F N VV+MTSN+GS  I    Q +   +EA     +  V++     FRPEF+NRIDE +VF+PL  ++I+ I EIQ+ R++ RL ++++ L  ++EA+  L  +GFDP +GARP+KR IQ+ +EN +A  IL G
Sbjct:  687 FNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNLGSAQI----QELAGDREA----QRAAVMDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAG 834          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.635e-34
Identity = 75/157 (47.77%), Postives = 107/157 (68.15%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSNIGS +I +    +QD     YE +K+ V+E  ++ FRPE +NRIDE +VF  LD   I  I +IQ+  ++ RL+++ + L  +  A+ ++   GFDP +GARP+KR IQ  +EN +A A+L G+
Sbjct:  691 FNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQ--MGIQD-----YEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGN 840          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_YERPE2.517e-3549.37Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB1_SYNY32.517e-3549.68Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_HAEDU3.288e-3550.00Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_CHRVO3.288e-3550.00Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_AQUAE4.294e-3547.80Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB_GLOVI1.249e-3447.77Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_CLOPE2.131e-3445.57Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_TREDE3.635e-3447.44Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_PSEAE3.635e-3448.72Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_NEIMB3.635e-3447.77Chaperone protein clpB OS=Neisseria meningitidis s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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