CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.635e-34
Identity = 75/157 (47.77%), Postives = 107/157 (68.15%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSNIGS +I +    +QD     YE +K+ V+E  ++ FRPE +NRIDE +VF  LD   I  I +IQ+  ++ RL+++ + L  +  A+ ++   GFDP +GARP+KR IQ  +EN +A A+L G+
Sbjct:  691 FNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQ--MGIQD-----YEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGN 840          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.098e-34
Identity = 74/157 (47.13%), Postives = 106/157 (67.52%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FN+LLQ+LDDGR+TD QGRTV F N ++IMTSN+G+ Y L  L   +DS     + ++ QV+E+ R  FRPEFLNR+DE I+F  L   E+  IV+IQ+ R++  L  +KI L    +A   L   G+DP +GARP+KR IQ+ V++ +A  +L+G+
Sbjct:  689 FNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTSNLGAEY-LTALGENEDS-----DAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGE 839          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.098e-34
Identity = 74/156 (47.44%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN++LQ+LDDGR+TD QGRTV FTN V+I+TSNIGS  IL+         ++ Y  M+++V +     FRPEFLNR+DE I+F  L  +E+ +IV +Q+NR+++RL  +K+ L  +  A   L   G+DP +GARP+KR IQ+ +E  IA +IL G
Sbjct:  693 FNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILDL-----GGDDSQYREMERRVHDALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLKRAIQRELETPIAKSILAG 843          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.058e-33
Identity = 76/169 (44.97%), Postives = 108/169 (63.91%), Query Frame = -3
Query:  319 VLLNSNMEL*SP--FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILK 819
            V+L   ME   P  FN+LLQ+LDDGR+TD QGRTV+FTN VV+MTSN+GS  I    +      E     M++ V +  +  F PEFLNRID+ ++F PL   +I +IV++Q+  ++ RL    +    T  A+  +  +G+DP +GARP+KRVIQ+ V+N +A AILK
Sbjct:  696 VILLDEMEKAHPDVFNVLLQVLDDGRLTDGQGRTVNFTNTVVVMTSNVGSQVIQRVTEEGGGEDE-----MRQAVEDALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQLQLEELRSRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILK 859          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 74/158 (46.84%), Postives = 109/158 (68.99%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QGRTV F N ++IMTSN+G+ Y++  L   QD      + ++ +V+ + R +FRPEFLNR+DE I+F  L  K++ +IVEIQ  R++  L  +KI L    EA+  L   G+DP +GARP+KRV+Q+ +++ +A  IL G+I
Sbjct:  687 FNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLVN-LGEDQD-----VDAVRDEVMGVVRASFRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSLDHEAIEWLAAKGYDPAYGARPLKRVMQKELQDPLAEKILLGEI 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 73/156 (46.79%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V+IMTSN+GS +I       Q    + Y  MK  V E  ++ F+PEFLNRIDE +++  L  ++I KIV+IQ+  +K RL  ++I L  + +A   L   G+DP +GARP+KR IQ+ +++ +A+A+L+G
Sbjct:  693 FNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWI-------QQYGSSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEG 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.804e-33
Identity = 76/159 (47.80%), Postives = 104/159 (65.41%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKID-LHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD+QGR V F N V+IMTSN+GS  I +    + D     Y+ MKK V+ +  Q FRPEF+NRIDE +VF PL  K +  I  IQ+  +  RL+++       T +A+  L  +GFDP +GARP+KR+IQQ +EN ++  IL  D+
Sbjct:  689 FNILLQVLDDGRLTDNQGRMVDFNNTVIIMTSNLGSDLIQKKF-DISD-----YDTMKKTVLNVVNQYFRPEFINRIDEIVVFHPLSIKHLIDIANIQLKYLYSRLEERGYPRTGITNKALLFLSKIGFDPIYGARPLKRIIQQYIENPLSQKILSDDL 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.356e-33
Identity = 68/159 (42.77%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            F+ILLQ+LDDGR+TD QGRTV F N ++++TSN+GS Y+++      + K+        QV+E+ R +F+PEFLNR+D+ +VF  L  +E+S+I  +Q+N +  RL ++++ L  T EA+  L   G DP +GARP++R++Q  + + +A  IL G+IK
Sbjct:  691 FDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLVDPTTGEAEKKQ--------QVLEVVRSSFKPEFLNRLDDLVVFSALSQEELSRIARLQINGLARRLAERRLTLEVTDEALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAREILSGEIK 841          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.077e-33
Identity = 72/156 (46.15%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+L+DGR+TDS GRTV F N V++MTSN+GS  I E +   +  + AV + +           FRPEF+NRIDE +VF+PL  ++I+ I EIQ+ R++ RL ++++ L  + EA+  L  +G+DP +GARP+KR IQ+ +EN +A  IL G
Sbjct:  687 FNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQIQELVGDREAQRAAVMDAVGAH--------FRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLERELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILAG 834          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.077e-33
Identity = 76/156 (48.72%), Postives = 103/156 (66.03%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN LLQ+LD+GR+TD QGRTV F + V+IMTSN+GS  I       Q   E  YE MK  V+E+    FRPEF+NRIDE IVF  L    + +I +IQ+ R++ RL+ +++ L   ++A+  L  LG+DP FGARP+KR IQ  +EN +A A+L G
Sbjct:  692 FNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSDMI-------QLLAEKSYEEMKSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDAINQLVELGYDPLFGARPLKRAIQNYIENPLAQALLAG 840          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_NEIMA3.635e-3447.77Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_RHIME8.098e-3447.13Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_PROMM8.098e-3447.44Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_RHOBA1.058e-3344.97Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_RHILO1.381e-3346.84Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_GEOSL1.381e-3346.79Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_BLOFL1.804e-3347.80Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPB_STRCO2.356e-3342.77Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_PSEPK3.077e-3346.15Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_DICNO3.077e-3348.72Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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