CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.019e-33
Identity = 77/156 (49.36%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+LDDGR+TD QGRTV F N V++MTSN+GS       Q +Q       +V+K  V +  +  FRPEFLNRIDE +VF  LD   I  I  IQ+ R+  RL    + L  +  AV  L   G+DP FGARP+KR IQQ +EN +A  IL+G
Sbjct:  690 FNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNLGS-------QLIQQMASESPDVIKGAVWQEVKTHFRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISDPAVAKLASAGYDPVFGARPLKRAIQQQIENPVARMILEG 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.249e-33
Identity = 77/158 (48.73%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGRITDSQGRTV F N V+IMTSNIGS ++L+ L+     KE   E++  Q+    R  FRPEFLNR+DE I+F+PL + EI  IV+  +  ++ RL  + I +  T+ A   +   GFDP +GARP+KR +Q+ VE ++A  ++ G I
Sbjct:  693 FNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRELVMGQL----RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVKLTEAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTI 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 5.249e-33
Identity = 77/158 (48.73%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QGRTV F N ++IMTSN+GS ++  T     D  ++V E+    V+E  R  FRPEFLNRID+ I+F  L   E+  IVEIQ+ R+   L  +KI L   ++A + L   G+DP +GARP+KRVIQ+ V++ +A  IL G+I
Sbjct:  689 FNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSEFM--TQMGDNDDVDSVREL----VMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEI 840          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.855e-33
Identity = 74/158 (46.84%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QGRTV F N V+IMTSN+G+ Y++   ++         E ++  V+ + R +FRPEFLNR+DE I+F  L  +++  IV+IQM R++  L  +KI L    +A   L   G+DP +GARP+KRVIQ+ V++ +A  IL GDI
Sbjct:  687 FNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEYLVNLGENDD------VETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDI 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.855e-33
Identity = 74/159 (46.54%), Postives = 105/159 (66.04%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN+LLQ+LDDGR+TD QGRTV F N ++IMTSN+GS +++   +    S       +++QV+ + R  FRPEFLNR+DE I+F  L   E+ +IVEIQ  R++  L  +KI L     A   L   G+DP +GARP+KRVIQ+ +++ +A  IL GD+K
Sbjct:  688 FNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPEGEDTS------AVREQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVK 840          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.953e-33
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN+LLQ+LDDGR+TD QGRTV F N V++MTSN+GS       Q +Q      Y+V+K  V+   +  FRPEF+NRIDE +VF  L    I  I  IQ++ +  RL Q ++ L  ++ A+T L  +GFDP FGARP+KR IQ  +EN +A  +L+G
Sbjct:  692 FNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGS-------QMIQQMSGDDYQVIKLAVMGEVKTYFRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSEPALTKLAEVGFDPVFGARPLKRAIQAQIENPLAKELLEG 840          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 8.953e-33
Identity = 71/158 (44.94%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QGR V F N ++IMTSNIGSH+ILE     +D++E V + +K +        F+PEFLNRIDE I F+ LD   I +IV++ +  ++++LK K I L ++ + V  L    +DP++GARP++R IQ+ +E  +A  IL  ++
Sbjct:  688 FNVLLQVLDDGRLTDGQGRIVDFKNTLIIMTSNIGSHFILEDPNLSEDTREKVADELKAR--------FKPEFLNRIDEIITFKALDLPAIKEIVKLSLKDLENKLKPKHITLEFSDKMVDYLANNAYDPHYGARPLRRYIQREIETSLAKKILANEV 837          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.527e-32
Identity = 67/159 (42.14%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            F+ILLQ+LDDGR+TD QGRTV F N ++++TSN+GS Y++ +         A  E  ++QV+E+ R +F+PEFLNR+D+ ++F  LD  E+++I  +Q+  +  RL  +++ L  T EA+  L   GFDP +GARP++R+IQ  + + +A  IL G+++
Sbjct:  687 FDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLVGS---------APEEEKRRQVMEVVRSSFKPEFLNRLDDLVIFSALDEDELARIAGLQIAGLARRLADRRLSLDVTPEALAWLAKEGFDPAYGARPLRRLIQTAIGDRLAKEILAGEVR 836          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.527e-32
Identity = 76/158 (48.10%), Postives = 105/158 (66.46%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGRITDSQGRTV F N V+IMTSNIGS ++L+ L+     KE   +++  Q+    R  FRPEFLNR+DE I+F+PL + EI  IV+  +  ++ RL  + I +  T  A   +   GFDP +GARP+KR +Q+ VE ++A  ++ G I
Sbjct:  693 FNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRDLVMGQL----RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTI 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.527e-32
Identity = 68/159 (42.77%), Postives = 110/159 (69.18%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            F+ILLQ+LDDGR+TD QGRTV F N ++I+TSN+GS ++     +   + E   E  K+QV+E+ R +F+PEFLNR+D+ +VF  L+ +E+ +I ++Q++R+  RL Q+++ L  T  A+  L   G DP +GARP++R++Q  + + +A  IL G++K
Sbjct:  691 FDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFLSGHGPAEPQTSE---EEKKRQVLEVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVK 846          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_RALSO4.019e-3349.36Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_BACAN5.249e-3348.73Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_AGRT55.249e-3348.73Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_BRUSU6.855e-3346.84Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRAJA6.855e-3346.54Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_NITEU8.953e-3347.44Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_FUSNN8.953e-3344.94Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_STRAL1.527e-3242.14Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_BACCR1.527e-3248.10Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB1_STRAW1.527e-3242.77Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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