CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.995e-32
Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN+LLQ+LDDGR+TD QGRTV F N +++MTSN+GS Y++   +            +++QV+ + R  FRPEFLNR+DE I+F  L   E+ +IV+IQ  R+   L+ +KI L     A   L   G+DP +GARP+KRVIQ+ V++ +A  IL+G +K
Sbjct:  688 FNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLVNQPEGEDTG------AVREQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVK 840          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.995e-32
Identity = 70/161 (43.48%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILET--LQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FNILLQ+L+DGR+TDS+GR V F N V+IMTSN+G+  +     +    D++E  Y+ MK +V+E  ++ FRPEFLNRIDE IVF  L+ + +  IV + + +++ RLK++ + L  T +A+  +   GFDP +GARP++R IQ+ +E+ ++  +L+G I+
Sbjct:  630 FNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGASELKRNKYVGFALDNEEKDYKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIE 790          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.605e-32
Identity = 72/158 (45.57%), Postives = 109/158 (68.99%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+ DDGR+TDS+GR V+  N + IMTSNIGS  +LE ++  Q+ +    + +   +  + ++ FRPEF+NR+D+ + F PL   ++ KIV IQ+N +  RLK + ++L +T +A+  L   G+DP+FGARP+KR IQQ V N+++ AIL+G I
Sbjct:  688 FNILLQVFDDGRLTDSKGRVVNCKNALFIMTSNIGSDLLLEKME--QNKQGLAKDEIMLVLDPVIKKHFRPEFINRLDDILPFVPLREHDMEKIVVIQLNLLAKRLKDRDVELMWTPQALAHLAKEGYDPHFGARPLKRYIQQEVINQLSTAILEGKI 843          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.605e-32
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QG TV F N V+IMTSN+G+ Y++   ++         E ++  V+ + R +FRPEFLNR+DE I+F  L  +++  IV+IQM R++  L  +KI L    +A   L   G+DP +GARP+KRVIQ+ V++ +A  IL GDI
Sbjct:  687 FNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNLGAEYLVNLGENDD------VETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDI 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.402e-32
Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FNILLQ+L+DGR+TDS GRTV F N V++MTSN+GS  I E +   +  + AV + +           FRPEF+NRIDE ++F+PL   +I+ I +IQ+ R++ RL ++++ +  + EA+  L  +G+DP +GARP+KR IQ+ +EN +A  IL G
Sbjct:  687 FNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQIQELVGDREAQRAAVMDAVSTH--------FRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILSG 834          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.402e-32
Identity = 69/159 (43.40%), Postives = 107/159 (67.30%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN LLQ+LDDGR+TDS GRTV F N ++IMTSNIGS Y+L+ +    +    V E    +V+E  R+ FRPEFLNR+DE ++F+PL   +I++IVE+ + R++ RL ++KID+     A   +    +DP +GARP++R +Q  +E  +A  ++ G+++
Sbjct:  692 FNTLLQILDDGRLTDSHGRTVDFRNTIIIMTSNIGSPYMLDGISEGGEFLSGVRE----KVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELR 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.402e-32
Identity = 76/158 (48.10%), Postives = 104/158 (65.82%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGRITDSQGRTV F N V+IMTSNIGS ++L+ L+     KE   E++  Q+    R  FRPEFLNR+DE I+F+PL + EI  IV+  +  ++ RL  + I +  T  A   +   GFDP +GARP+KR +Q+ VE ++A  ++   I
Sbjct:  693 FNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEDDGSIKEESRELVMGQL----RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIASTI 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.443e-32
Identity = 76/157 (48.41%), Postives = 104/157 (66.24%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FN++LQ+LDDGR+TDSQGRTV F N ++IMTSNIGS YI E         +  YE +  +V+E     FRPEFLNRIDE I+F  L   ++ +IV+IQ +R++ RL  +K+ L  +  A+  L   GFDP +GARP+KR IQ+ +E  IA  IL+ +
Sbjct:  694 FNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYIFE-----YGGDDDRYEEILSRVMEAMLSNFRPEFLNRIDEIIIFHSLQKAQLREIVKIQTHRLESRL-ARKMSLKLSDAALDFLA-EGFDPVYGARPLKRAIQRELETTIAKEILRSN 843          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.443e-32
Identity = 68/159 (42.77%), Postives = 107/159 (67.30%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN LLQ+LDDGRITD+QGRTV F N V+IMTSNIGS ++L+   +  + K     ++  ++    R  FRPEFLNR+D+ ++F+PL  ++I +IVE+Q + ++ RL +++I +  T     ++   G+DP +GARP++R I   VE  +  A+L+GD++
Sbjct:  695 FNTLLQILDDGRITDAQGRTVDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGEL----RGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDAGREVIAHQGYDPVYGARPLRRYISHEVETLVGRALLRGDVQ 849          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 70/158 (44.30%), Postives = 106/158 (67.09%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNI+LQ+LD+GR+TDSQG TV F N ++++TSN+G+  ++      Q   E  Y+V K QV+E  +  F+PEFLNR+DE I+F  L+   I  IV+IQ+  +K  L  + I L + + A+  L   G+DP+FGARP+KR+IQ+ ++N +A  IL G++
Sbjct:  686 FNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVN-----QKEGEDTYKV-KDQVMEYVKMVFKPEFLNRLDEIILFHRLNQSNIHDIVKIQLEGLKKILSAQNIILEFDEPALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEV 837          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB_RHOPA1.995e-3245.28Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_OCEIH1.995e-3243.48Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB_PARUW2.605e-3245.57Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_BRUME2.605e-3246.20Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_PSESM3.402e-3244.87Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_DESVH3.402e-3243.40Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_BACC13.402e-3248.10Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_PLEBO4.443e-3248.41Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB2_STRAW4.443e-3242.77Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_RICBR5.803e-3244.30Chaperone protein clpB OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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