CV712206

Overview
NameCV712206
Unique NameCV712206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            +IETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.859e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 3.859e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.859e-43
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 6.583e-43
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = -1
Query:  137 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 409
            S+ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   48 SVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 172.94 bits (437), Expect = 1.123e-42
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
The following BLAST results are available for this feature:
BLAST of CV712206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B8_ARATH2.955e-4396.74Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]
H2B10_ARATH2.955e-4389.22Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B3_ARATH3.859e-4396.74Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B2_SOLLC3.859e-4397.83Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B2_MEDTR3.859e-4396.74Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B4_ARATH6.583e-4395.60Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_SOLLC1.123e-4295.65Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B11_ORYSJ1.466e-4294.57Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI1.466e-4294.57Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B1_ORYSJ3.267e-4293.48Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712206 ID=CV712206; Name=CV712206; organism=Citrus sinensis; type=EST; length=619bp
AAATAAGTCATTTTCTATCAGCACCATGCCATTTCACCAATACTAACTAC
TTACATTATTACTCCAAGAAAGGACACAGTAAACATCACTAACCCCAATT
TCATCGCACATAGTCAAACCTAACCCTAATTTAAGACGAGGTGAACTTGG
TAACCGCCTTGGTACCCTCAGAAACGGCATGCTTAGCCAGCTCACCAGGA
AGCACAAGTCTCACAGCGGTCTGGATTTCACGAGAAGTTATCGTCGGCTT
CTTGTTGTACCTTGCCAGCCTGGAAGATTCCTGAGCAAGCTTCTCGAAAA
TATCGTTGATGAAACTGTTCATAATTCCCATAGCCTTGCTCGAGATTCCG
ATATCTGGATGGACTTGCTTCAGGACTTTGAATATGTAGATCTTGTACGT
CTCAATGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCACCGGCTGCGGCTT
CCTTCGGAAGCTTCTTCCCGGCCTTCGGCTTCTTCTCGGCAGGCGCCTTC
TCCGCCACCGGTGTCTTCTTCTCCTCCGCTGGCTTCTTCTCCGCCTTTGG
TGCCATCGTCAGAAAAAACTGCGGGTTCGCGAGGAATTGAAAGTAAAAGA
CAAATTGTTAGATTCGCCT
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