CV712206

Overview
NameCV712206
Unique NameCV712206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_ANOGA (Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=2 SV=5)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 73/89 (82.02%), Postives = 84/89 (94.38%), Query Frame = -1 
Query:  137 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 403
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
The following BLAST results are available for this feature:
BLAST of CV712206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROTE2.051e-3683.33Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]
H2B_DROSI2.051e-3683.33Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE2.051e-3683.33Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR2.051e-3683.33Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME2.051e-3683.33Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA2.051e-3683.33Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY2.051e-3683.33Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER2.051e-3683.33Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_ANOGA2.051e-3683.33Histone H2B OS=Anopheles gambiae GN=AGAP012199 PE=... [more]
H2B1C_HUMAN2.051e-3682.02Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712206 ID=CV712206; Name=CV712206; organism=Citrus sinensis; type=EST; length=619bp
AAATAAGTCATTTTCTATCAGCACCATGCCATTTCACCAATACTAACTAC
TTACATTATTACTCCAAGAAAGGACACAGTAAACATCACTAACCCCAATT
TCATCGCACATAGTCAAACCTAACCCTAATTTAAGACGAGGTGAACTTGG
TAACCGCCTTGGTACCCTCAGAAACGGCATGCTTAGCCAGCTCACCAGGA
AGCACAAGTCTCACAGCGGTCTGGATTTCACGAGAAGTTATCGTCGGCTT
CTTGTTGTACCTTGCCAGCCTGGAAGATTCCTGAGCAAGCTTCTCGAAAA
TATCGTTGATGAAACTGTTCATAATTCCCATAGCCTTGCTCGAGATTCCG
ATATCTGGATGGACTTGCTTCAGGACTTTGAATATGTAGATCTTGTACGT
CTCAATGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCACCGGCTGCGGCTT
CCTTCGGAAGCTTCTTCCCGGCCTTCGGCTTCTTCTCGGCAGGCGCCTTC
TCCGCCACCGGTGTCTTCTTCTCCTCCGCTGGCTTCTTCTCCGCCTTTGG
TGCCATCGTCAGAAAAAACTGCGGGTTCGCGAGGAATTGAAAGTAAAAGA
CAAATTGTTAGATTCGCCT
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