CV712206

Overview
NameCV712206
Unique NameCV712206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_URECA (Histone H2B OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A E+SRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+T S
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTQS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BL3_STRPU (Late histone H2B.L3 OS=Strongylocentrotus purpuratus PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A ESSRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSRAMVIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+ND+FE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_MARGL (Histone H2B, sperm OS=Marthasterias glacialis PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   31 ESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 120
[Close]
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_ASTRU (Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = -1 
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 ESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
The following BLAST results are available for this feature:
BLAST of CV712206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_RHASC7.794e-3681.11Histone H2B OS=Rhacophorus schlegelii GN=histh2b P... [more]
H2B_URECA1.018e-3581.11Histone H2B OS=Urechis caupo PE=3 SV=2[more]
H2BL3_STRPU1.018e-3580.00Late histone H2B.L3 OS=Strongylocentrotus purpurat... [more]
H2BE_STRPU1.018e-3582.22Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2B4_CAEEL1.018e-3577.78Probable histone H2B 4 OS=Caenorhabditis elegans G... [more]
H2B3_CAEEL1.018e-3577.78Probable histone H2B 3 OS=Caenorhabditis elegans G... [more]
H2B1A_RAT1.018e-3582.22Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]
H2B11_XENLA1.018e-3580.00Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2[more]
H2B_MARGL1.329e-3580.00Histone H2B, sperm OS=Marthasterias glacialis PE=1... [more]
H2B_ASTRU1.329e-3580.00Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712206 ID=CV712206; Name=CV712206; organism=Citrus sinensis; type=EST; length=619bp
AAATAAGTCATTTTCTATCAGCACCATGCCATTTCACCAATACTAACTAC
TTACATTATTACTCCAAGAAAGGACACAGTAAACATCACTAACCCCAATT
TCATCGCACATAGTCAAACCTAACCCTAATTTAAGACGAGGTGAACTTGG
TAACCGCCTTGGTACCCTCAGAAACGGCATGCTTAGCCAGCTCACCAGGA
AGCACAAGTCTCACAGCGGTCTGGATTTCACGAGAAGTTATCGTCGGCTT
CTTGTTGTACCTTGCCAGCCTGGAAGATTCCTGAGCAAGCTTCTCGAAAA
TATCGTTGATGAAACTGTTCATAATTCCCATAGCCTTGCTCGAGATTCCG
ATATCTGGATGGACTTGCTTCAGGACTTTGAATATGTAGATCTTGTACGT
CTCAATGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCACCGGCTGCGGCTT
CCTTCGGAAGCTTCTTCCCGGCCTTCGGCTTCTTCTCGGCAGGCGCCTTC
TCCGCCACCGGTGTCTTCTTCTCCTCCGCTGGCTTCTTCTCCGCCTTTGG
TGCCATCGTCAGAAAAAACTGCGGGTTCGCGAGGAATTGAAAGTAAAAGA
CAAATTGTTAGATTCGCCT
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