CV712206

Overview
NameCV712206
Unique NameCV712206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+NDIFE++A ESSRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMIIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 70/90 (77.78%), Postives = 84/90 (93.33%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A E+SRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 121          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = -1
Query:  134 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 406
            +ETY  YI+KVLKQVHPD GIS + M IMNSFINDIFE+LA E+SRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTKFTS+
Sbjct:   24 VETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A E+SRLA YN+K TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYSIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNRKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A E+SRLA YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   17 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BL2_PSAMI (Late histone H2B.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 71/90 (78.89%), Postives = 85/90 (94.44%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ND+FE++A E+SRL++YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   34 ESYGIYIYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2BL1_STRPU (Late histone H2B.L1 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 71/90 (78.89%), Postives = 83/90 (92.22%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A E+SRLA YNKK TITSRE+QT VRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTVVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1A_HUMAN (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = -1
Query:  134 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 403
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A E+SRLA Y+K+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
The following BLAST results are available for this feature:
BLAST of CV712206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BE2_PSAMI1.329e-3582.22Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]
H2B2_CAEEL1.329e-3577.78Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P... [more]
H2B1_CAEEL1.329e-3577.78Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ... [more]
H2B_OLILU1.736e-3580.22Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2B_HOLTU1.736e-3578.89Histone H2B OS=Holothuria tubulosa PE=3 SV=1[more]
H2BL1_PSAMI1.736e-3580.00Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2BL4_STRPU2.962e-3578.89Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BL2_PSAMI2.962e-3578.89Late histone H2B.2.2 OS=Psammechinus miliaris PE=3... [more]
H2BL1_STRPU2.962e-3578.89Late histone H2B.L1 OS=Strongylocentrotus purpurat... [more]
H2B1A_HUMAN6.598e-3580.00Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712206 ID=CV712206; Name=CV712206; organism=Citrus sinensis; type=EST; length=619bp
AAATAAGTCATTTTCTATCAGCACCATGCCATTTCACCAATACTAACTAC
TTACATTATTACTCCAAGAAAGGACACAGTAAACATCACTAACCCCAATT
TCATCGCACATAGTCAAACCTAACCCTAATTTAAGACGAGGTGAACTTGG
TAACCGCCTTGGTACCCTCAGAAACGGCATGCTTAGCCAGCTCACCAGGA
AGCACAAGTCTCACAGCGGTCTGGATTTCACGAGAAGTTATCGTCGGCTT
CTTGTTGTACCTTGCCAGCCTGGAAGATTCCTGAGCAAGCTTCTCGAAAA
TATCGTTGATGAAACTGTTCATAATTCCCATAGCCTTGCTCGAGATTCCG
ATATCTGGATGGACTTGCTTCAGGACTTTGAATATGTAGATCTTGTACGT
CTCAATGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCACCGGCTGCGGCTT
CCTTCGGAAGCTTCTTCCCGGCCTTCGGCTTCTTCTCGGCAGGCGCCTTC
TCCGCCACCGGTGTCTTCTTCTCCTCCGCTGGCTTCTTCTCCGCCTTTGG
TGCCATCGTCAGAAAAAACTGCGGGTTCGCGAGGAATTGAAAGTAAAAGA
CAAATTGTTAGATTCGCCT
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