CV712202

Overview
NameCV712202
Unique NameCV712202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_CAEEL (Eukaryotic translation initiation factor 3 subunit K OS=Caenorhabditis elegans GN=eif-3.K PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 44/158 (27.85%), Postives = 75/158 (47.47%), Query Frame = -3 
Query:  334 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFW-----------------DEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 756
            Y  D  L +L+LYQ  PE+    +V ++L+K LM +P+ DF+L   LI        + + +  L   LE+  F  FW                     +   +++ + GFE A++ +A  V+S+T+QKI + +L+    L G + DK +     + GW
Sbjct:   41 YDKDIVLTILKLYQLNPEKYDEAVVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGAYKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLS---RLLGGASDKEVTALAQSFGW 195
The following BLAST results are available for this feature:
BLAST of CV712202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
EIF3K_CAEEL3.397e-1127.85Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712202 ID=CV712202; Name=CV712202; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTGGTAAGAGAAATAAATGCCAATAATAACATTGTGTCTC
ATCAATTCCTCCAAGCCACTTGGGCTATGTTTTCAACATAAACACAAAAA
GAGATTACAGCAGTCCCCAAAATTCACTGCAAGAGTGCTATAGCATCTGG
TTAAAACAAATGAAAATTTACCAAATGCCAGGATTTGAACTTCAATCAAC
CGAGAATGGGAAATATGCGGGTAATGTGTTCTAACGGGATGCTATCAGCA
ACATTCTTCTTCAGCTCGGGATGATTAAATTCATTAGGCGGCAGGACAAT
CAATTGGCTCGTACTTTGATCTCCTTCAAGAATCCAGCCACAATTTGCCT
TCTGGTGTTCAAGGAATTTGTCCAGAGATAGACCTTTAAGATTGATAGCC
TCGGCAAGCACAGTCCTTGGAATCTTTTGATATGTCAATGAAAGGACATG
AATTGCAAAGGACTGAATTGCTTGCTCAAAACCTGGCACGGCTTCAACTA
TGTTACGATGCTTAGCTGCTTCATCCCAGAAATGGCGGAACCTTCCTGTC
TCCAAGTAGTGAGAGAGGACAATCAGCGTCTTGAATTGATCCTCCATTTG
CACTCTTTCTGGGATCAAAAAGAGACAGAGACTGAAATCTGGAGCTGGCA
TTGCCATAAGAGCCTTAATTAAAATGCGGGCAACAATTTGGGTACTCATT
CTTTCTGGTTCAAACTGATAAAGACGAAGAAGGCAAAGATTTGCATCCAG
ACTATATGTTTGTGCCT
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