CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.668e-20
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  388 LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 636
            LP MD+FV TADP  E P+   NTVLS++A  YP  K++ Y+SDDA  + T  A++EA++FA  W+P+C+K  VEPR+P AYF
Sbjct:  142 LPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.001e-19
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  388 RYENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 651
            R+  DLPG+D+FV T DP  E  +  +NT+LS++A DYP ++ + YLSDD      + A++E ++FA+ W+P+C+K  VEPRSP  YF
Sbjct:  164 RHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 251          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.001e-19
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  388 RYENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 651
            R+  DLPG+D+FV T DP  E  +  +NT+LS++A DYP ++ + YLSDD      + A++E ++FA+ W+P+C+K  VEPRSP  YF
Sbjct:  134 RHSGDLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 221          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.308e-19
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            + LPG+DIFV TADP  E  +   N++LS++A DYP ++ + YLSDD+    T+ A+ EA++FA  W+P+C+K  +EPR P +YF+  S P+     + F+
Sbjct:  181 SSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEEFV 281          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.914e-19
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = -2
Query:  388 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF 642
            +DLP +D+FV TAD   E PI+ +NTVLS++A +YP  KL+ Y+SDD     T+++L EAS+F K W P+CKK+ V  R+P  YF
Sbjct:   90 HDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF 174          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.805e-19
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = -2
Query:  373 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPT--EKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISE 642
            ++LP +D+FV TADP  E P++ +NTVLS++A DYP   EKL+ Y+SDD     T YAL EA++FA+ W+P+C++  V  R+P  YF S  E
Sbjct:   89 DELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPE 180          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.970e-19
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  337 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLA 642
            ++LPG+D+F+ T DP  E  I  +N +LS++A DYP +K + YLSDD      +  L+E ++FA  W+P+C+K  +EPR+P +YF   S P+     + FL+
Sbjct:  167 SNLPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYFAVKSRPYAGSAPEDFLS 268          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.446e-18
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  367 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPH 645
            +  LPG+D+F+ T DP  E  +  +N++LS++A DYP ++ + YLSDD A  + +  LIE ++FA  W+P+C+K  VEPR+P +YF + + P+
Sbjct:  148 DGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPY 240          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  385 LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 636
            LPG+D+FV TADP  E  +  +N VLS++A DYP ++ + YLSDD+     + AL+E ++FA  W+P+C+K  +EPRSP +YF+
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFE 250          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.889e-18
Identity = 40/84 (47.62%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  385 LPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQ 636
            LPG+D+FV TADP  E  +  +N VLS++A DYP ++ + YLSDD+     + AL+E ++FA  W+P+C+K  +EPRSP +YF+
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYFE 250          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLF7_ORYSJ7.668e-2053.01Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF2_ORYSJ1.001e-1946.59Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ1.001e-1946.59Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF6_ORYSJ1.308e-1942.57Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLB5_ARATH2.914e-1950.59Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CSLH1_ORYSJ3.805e-1948.91Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLF8_ORYSJ4.970e-1940.20Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF9_ORYSJ1.446e-1841.94Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF3_ORYSJ1.889e-1847.62Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI1.889e-1847.62Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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