CV712191

Overview
NameCV712191
Unique NameCV712191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 61/174 (35.06%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 600
            HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 61/174 (35.06%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 600
            HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 64/195 (32.82%), Postives = 107/195 (54.87%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            HS+ LE+ +  I G++ V  S PY+ KGL  AAI S +PVI FE   LY   ++ IP + Y   + EA ++  G  +TI++Y    + ++    +   K    E+ID+R++ P+D  T+ NS+KKT R+L+V E +++    A +  ++TE    YL      ++  D+  P A   E++     A+++ AV QL
Sbjct:  131 HSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGIELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLARG-EKYQFEINARVIDAVNQL 324          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 600
            HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E +P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ TI  S+ KT R+LI  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  196 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 60/174 (34.48%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLK-ERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNK-GYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPY 600
            HSQ  E++F   PGI++V   +P+ AKGL+ + I  +NP I FE  +LY    E++P E Y   L +AE+++ G  VT++ +    + + + A     K G   EVID+R++ P+D+ T+  S+ KT R+L+  E   TGG  + +++ + E     L+API  +   D P P+
Sbjct:  196 HSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVEQVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 64/195 (32.82%), Postives = 106/195 (54.36%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYN-LKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            HS+ LE+ +  I G++ V  S PY+ KGL  AA+ S +PV+ FE   LY   ++ IP + Y   + +A ++  G ++TI++Y    + ++        K    E+ID+R++ P+D  T+ NS+KKT R+L+V E  +T      + A++TE    YL A    ++  D+  P A   E +     A+I+ AV QL
Sbjct:  132 HSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLARG-EHYQFNLNARILEAVNQL 325          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 55/173 (31.79%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   85 HSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYA 603
            H +  E+YF    G+++VA STP++A  +++ AI S++PVI FE +  Y  K  +   E    L  + +VR G   TI+ ++ M    ++AA+    +G   EV+D+RSL P D   +  S++KT R+++ +E      +G+ + A + E     L+AP++ ++  D P P A
Sbjct:  142 HQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRYWPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRAAEIAAEEGRSLEVVDLRSLAPIDYAPVLRSVQKTGRLVVAQEAPGIVSVGSEVAAVVGEKAFYSLEAPVLRVAGFDTPFPPA 314          
The following BLAST results are available for this feature:
BLAST of CV712191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_RAT8.953e-2435.062-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE8.953e-2435.062-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE1.169e-2332.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_HUMAN1.169e-2335.632-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN1.169e-2334.482-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCPN3.402e-2332.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX7.843e-2031.79Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712191 ID=CV712191; Name=CV712191; organism=Citrus sinensis; type=EST; length=715bp
CTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTGG
ACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTTG
AGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGACC
CCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACCC
AGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATTC
CAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCCT
GGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGAT
GCAAGCTGCTAAAACTTTGGTAAACAAAGGGTATGATCCTGAGGTTATTG
ACATCAGGTCATTGAAACCATTTGATCTTTATACCATTGGAAATTCAATT
AAAAAGACACATCGTGTACTGATTGTGGAGGAGTGCATGCGGACTGGTGG
AATTGGTGCTAGTTTAACTGCAGCTATCACTGAGAATTTCCATGATTACT
TGGATGCTCCTATTGTATGCTTATCATCACAGGACGTGCCAACTCCATAT
GCCGGCACGTTGGAGGAATGGACTGTGGTTCAACCTGCCCAGATTGTGAC
AGCAGTTGAGCAGCTTTGCCAATAGTTTTTGAATACCGAAGTGTCATAAC
CGAATCTATCTATGC
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