CV712180

Overview
NameCV712180
Unique NameCV712180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712180_ssr738 microsatellite CV712180_ssr738:738..747. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:21..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAPA (Photosystem II reaction center psb28 protein OS=Cyanophora paradoxa GN=psb28 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.052e-30
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFIQG DE  +PDVKL++S+DG+NG+A F F +P+VFD     G+ITG Y+IDEEG L +  V AKF+NG+P  IEA YIM +  EW+RF+RFMERYA QN L F K
Sbjct:    4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELSTRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMERYAKQNDLSFTK 109          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP6 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.819e-30
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF +G DE  VPDV+LT+SRDG NG A F F EP      GE+  DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+RYA  NGL F +
Sbjct:    5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNE7 (Photosystem II reaction center psb28 protein OS=Synechococcus elongatus (strain PCC 7942) GN=psb28 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.819e-30
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF +G DE  VPDV+LT+SRDG NG A F F EP      GE+  DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+RYA  NGL F +
Sbjct:    5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_THEEB (Photosystem II reaction center psb28 protein OS=Thermosynechococcus elongatus (strain BP-1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.773e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -1
Query:  273 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 614
            M     IQFI+G +E  VPDV+LT++RDGS+G A+F F  P +        ++TG YM+DEEG + + DV+AKF+NG+P  IEA Y MRSP+EWDRF+RFM+RYA  +GL F K
Sbjct:    1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIVQEGNL--EVTGMYMVDEEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFMDRYAASHGLGFQK 112          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP8 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 8801) GN=psb28 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.742e-28
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = -1
Query:  279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596
            IQF +G  E  +PDV+LT+SR G +G A F F EPS+F+S     ++TG Y++DEEG + + +V  KF+NG+ + IEA  IMRSP EWDRFMRFMERYA + GL+F
Sbjct:    4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSEST-DEVTGMYLVDEEGEITTTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFMERYAKEQGLEF 108          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ACAM1 (Photosystem II reaction center psb28 protein OS=Acaryochloris marina (strain MBIC 11017) GN=psb28 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.887e-28
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQFI+G DE  +PDV+LT+++DGS+G AIF F  P++    G++ ++ G Y+ DEEG L ++DVSAKFVNG+P  IEA Y M+S  EWDRFMRFM RYA  +GL F K
Sbjct:    5 IQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQE-GKL-EVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSK 110          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_NOSP7 (Photosystem II reaction center psb28 protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psb28 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D  G   DITG Y+ DEEG + + +V AKFVNG+P  +EA Y+M+S +EWDRFMRFMERYA +N L   K
Sbjct:    4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEIITREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSK 110          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAME (Photosystem II reaction center psb28 protein OS=Cyanidioschyzon merolae GN=psb28 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = -1
Query:  279 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 599
            +IQFIQG DE  +P V+LT+SRDG  G A+F F +P +    GEI   TG YMIDEEG + + +V AKFVNG+P  IEA Y+M++ + W+RFMRFM RYA   GL F
Sbjct:    3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEIVTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFMNRYAEAKGLSF 106          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP2 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psb28 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.425e-27
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF QG +E  VP ++LT+S DGS G A+FSF +P+   +     +ITG Y+IDEEG + + +V AKF +G+P  IEA+ +MRS  EWDRFMRFMERYA +NGL+F K
Sbjct:    4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMERYAAENGLEFTK 110          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ANAVT (Photosystem II reaction center psb28 protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psb28 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.168e-27
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF +G DE  +P+V+LT+SR G  G A F F+ P + D  G   DITG Y+IDEEG + + +V  KFVNGRP  +EA Y+M+S +EW+RF+RFMERYA +N L F K
Sbjct:    4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110          
The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_CYAPA1.052e-3060.19Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_SYNP66.819e-3058.72Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNE76.819e-3058.72Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_THEEB5.773e-2953.51Photosystem II reaction center psb28 protein OS=Th... [more]
PSB28_CYAP83.742e-2854.72Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_ACAM14.887e-2856.48Photosystem II reaction center psb28 protein OS=Ac... [more]
PSB28_NOSP71.422e-2753.70Photosystem II reaction center psb28 protein OS=No... [more]
PSB28_CYAME1.857e-2755.14Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_SYNP22.425e-2754.63Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_ANAVT3.168e-2753.70Photosystem II reaction center psb28 protein OS=An... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bp
CCCTTTTTTTTTTGGGAAAAACAGATGATTAATTCATTAAGAGAAGTTCA
AGAACACGGACCATCACCTTGCATGTACATAATGAAGGGAAGAAAATCGA
ACATCAGTAGCAGCAGCAAAAATATGTTGAAGAGAAGAGAGCATAAAGGT
TTTTGCATCAAACTTAAATGGCTGTCAAGCAAAGCCTTCACCATTTGCCT
GACCAAATTACACAAAACCAAAGATTTAATAGGGTAAAGCAAAGCAAGGA
GAAGAAAAAAAATGCCTCATTTCTTGACAAATTGCAAGCCATTCTGATTA
GCATACCGCTCCATGAACCTCATGAACCTATCCCACTCTCGGGGAGACCG
CATGATATACTTTGCTTCAATCCTAGAAGGTCTCCCATTGACAAATTTGG
CACTTACATCAACTGATTGAAGAGTTCCCTCCTCATCAATCATGTAAAAT
CCGGTGATATCACCAATTTCACCGGACGAGTCAAAAACGGAGGGTTCACT
AAAACTGAATATGGCCATACCGTTTGAACCATCTCTTGATTTTGTTAGCT
TCACATCCGGAACTGTCAATTCATCAGTTCCTTGGATGAACTGAATTGTT
GGTTTCACCGCCATCGTTATGGGTCCAGATACCTTAGAATTTCGTGTTAC
CAGGGACAAACGCATACGAGGCATATGTACAGATTGGCCGTTGAATGGTG
ATTGTGCACTTCCATGCACAGCCCATGTTACAATACCAGAGAGAGAGGGA
GAGCGGGATTGTGGGTGCCAACAGTGTGAGATTGGAGAGGCTAATGCAAG
AGACCGCAGAGCTGCCATTGCACAAAGACACTGAAGCAGAGACGGAGTCG
GAGAAAGAAGGAGGTAGCCAAA
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